RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CCDC47Q96A33 483 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 TIGD1Q96MW7 591 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 PPP1R10Q96QC0 940 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 TSPAN18Q96SJ8 248 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 COLEC11Q9BWP8 271 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 NSUN3Q9H649 340 aaKnown RBP16.68■□□□□ 0.26
SDC3-203ENST00000471567 TLR9Q9NR96 1032 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 EXOC1Q9NV70 894 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 CNTN3Q9P232 1028 aa16.68■□□□□ 0.26
SDC3-203ENST00000471567 TDRD15B5MCY1 1934 aaKnown RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 GARTP22102 1010 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 OR1G1P47890 313 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 DPYDQ12882 1025 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 BMS1Q14692 1282 aaKnown RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 NAB2Q15742 525 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 CCDC85BQ15834 202 aaPredicted RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 KMT5BQ4FZB7 885 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 CLEC17AQ6ZS10 378 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 CD302Q8IX05 232 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 GLIS3Q8NEA6 775 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 POMGNT1Q8WZA1 660 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 PPP2R3CQ969Q6 453 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 CXCL16Q9H2A7 254 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 RPF1Q9H9Y2 349 aaKnown RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 NGRNQ9NPE2 291 aaKnown RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 SLC38A7Q9NVC3 462 aa16.67■□□□□ 0.26
SDC3-203ENST00000471567 AGO2Q9UKV8 859 aaKnown RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.67■□□□□ 0.26
SDC3-203ENST00000471567 TTC26A0AVF1 554 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 TISP43B9A030 160 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 FSCN2O14926 492 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 KIAA0391O15091 583 aaKnown RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 LDHAP00338 332 aaKnown RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 RPN1P04843 607 aaKnown RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 ADRB2P07550 413 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 ADSSP30520 456 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 SNRPFP62306 86 aaKnown RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 BMT2Q1RMZ1 405 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 SEZ6Q53EL9 994 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 TMEM173Q86WV6 379 aaPredicted RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 ELOA2Q8IYF1 753 aaPredicted RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 MICAL1Q8TDZ2 1067 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 PPM1EQ8WY54 764 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 UROC1Q96N76 676 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 SLC39A2Q9NP94 309 aa16.66■□□□□ 0.26
SDC3-203ENST00000471567 CPSF3Q9UKF6 684 aaKnown RBP16.66■□□□□ 0.26
SDC3-203ENST00000471567 PLXNA4Q9HCM2 1894 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 MEFVO15553 781 aaPredicted RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 NCK2O43639 380 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 RHOBTB3O94955 611 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 PRR29P0C7W0 189 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 CXCL8P10145 99 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 HOXD13P35453 343 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 IRS1P35568 1242 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 TNFSF9P41273 254 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 ERVFC1P60507 584 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 HSP90AA2PQ14568 343 aaPredicted RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 KCNB1Q14721 858 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 ENOX2Q16206 610 aaKnown RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 TCEAL5Q5H9L2 206 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 GLRA4Q5JXX5 417 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 BCL7CQ8WUZ0 217 aaPredicted RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 SCFD1Q8WVM8 642 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 DDX27Q96GQ7 796 aaKnown RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 ZMAT2Q96NC0 199 aaKnown RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 IKZF4Q9H2S9 585 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 MARCH5Q9NX47 278 aa16.65■□□□□ 0.26
SDC3-203ENST00000471567 CGNQ9P2M7 1197 aaKnown RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 HOOK1Q9UJC3 728 aaKnown RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 PRG3Q9Y2Y8 225 aaPredicted RBP16.65■□□□□ 0.26
SDC3-203ENST00000471567 CITO14578 2027 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 MYO7AQ13402 2215 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 CASTOR2A6NHX0 329 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 GADD45BO75293 160 aaPredicted RBP16.64■□□□□ 0.25
SDC3-203ENST00000471567 EFEMP2O95967 443 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 UBE2HP62256 183 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 PPP2R3AQ06190 1150 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 STK4Q13043 487 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 ZBTB41Q5SVQ8 909 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 TMC7Q7Z402 723 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 VPS52Q8N1B4 723 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 TCF25Q9BQ70 676 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 ZBP1Q9H171 429 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 ASB7Q9H672 318 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 ENTPD7Q9NQZ7 604 aa16.64■□□□□ 0.25
SDC3-203ENST00000471567 LACTBL1A8MY62 500 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 TMEM189-UBE2V1I3L0A0 370 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 KINO60870 393 aaKnown RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 TADA2AO75478 443 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 KIF20AO95235 890 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 CTSAP10619 480 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 RPL9P32969 192 aaKnown RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 ACOT2P49753 483 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 SMC1AQ14683 1233 aaKnown RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 ZBTB6Q15916 424 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 KNOP1Q1ED39 458 aaKnown RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 ARMCX5Q6P1M9 558 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 DCLRE1AQ6PJP8 1040 aa16.63■□□□□ 0.25
SDC3-203ENST00000471567 CRELD2Q6UXH1 353 aaPredicted RBP16.63■□□□□ 0.25
SDC3-203ENST00000471567 HS2ST1Q7LGA3 356 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms