RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 STYXL1Q9Y6J8 313 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 ALDH2P05091 517 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 CXCL8P10145 99 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 TNFSF9P41273 254 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 DSC1Q08554 894 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 CLEC17AQ6ZS10 378 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 NELFCDQ8IXH7 590 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 COLGALT2Q8IYK4 626 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 ZNF507Q8TCN5 953 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 SPPL3Q8TCT6 385 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 SCFD1Q8WVM8 642 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 POF1BQ8WVV4 589 aa24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 PUF60Q9UHX1 559 aaKnown RBP24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 PRRC2BQ5JSZ5 2229 aaKnown RBP24.91■■□□□ 1.58
CCDC28B-203ENST00000461819 NRP1O14786 923 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 FAM189A1O60320 539 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 POU3F3P20264 500 aaPredicted RBP24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 PLCB3Q01970 1234 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 UBE3AQ05086 875 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 TUSC3Q13454 348 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 ZBTB41Q5SVQ8 909 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 ARMCX5Q6P1M9 558 aa24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 MAFAQ8NHW3 353 aaPredicted RBP24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 RPF1Q9H9Y2 349 aaKnown RBP24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 PRG3Q9Y2Y8 225 aaPredicted RBP24.9■■□□□ 1.58
CCDC28B-203ENST00000461819 GARTP22102 1010 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 ADSSP30520 456 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 ACOT2P49753 483 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 PPP2R3AQ06190 1150 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 STK4Q13043 487 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 ALKAL1Q6UXT8 129 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 TMEM173Q86WV6 379 aaPredicted RBP24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 KIAA0895Q8NCT3 520 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 PPM1EQ8WY54 764 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 IGSF21Q96ID5 467 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 CNTN3Q9P232 1028 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 LZTS1Q9Y250 596 aa24.89■■□□□ 1.58
CCDC28B-203ENST00000461819 SMIM28A0A1B0GU29 152 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 CASTOR2A6NHX0 329 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 RHOBTB3O94955 611 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 SMC2O95347 1197 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 DNAJB1P25685 340 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 HOXD13P35453 343 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 KCNB1Q14721 858 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 CCDC85BQ15834 202 aaPredicted RBP24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 ENOX2Q16206 610 aaKnown RBP24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 BMT2Q1RMZ1 405 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 SLC10A6Q3KNW5 377 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 TIGD5Q53EQ6 642 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 XKR4Q5GH76 650 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 HS2ST1Q7LGA3 356 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 NOC3LQ8WTT2 800 aaKnown RBP24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 FAM212AQ96EL1 285 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 SAAL1Q96ER3 474 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 PPP1R10Q96QC0 940 aaKnown RBP24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 CBWD1Q9BRT8 395 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 PLEKHA5Q9HAU0 1116 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 TLR9Q9NR96 1032 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 SLC38A7Q9NVC3 462 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 RMND1Q9NWS8 449 aa24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 CPSF3Q9UKF6 684 aaKnown RBP24.88■■□□□ 1.57
CCDC28B-203ENST00000461819 KCNE1P15382 129 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 BCL7CQ8WUZ0 217 aaPredicted RBP24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 SMARCE1Q969G3 411 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 FAM213AQ9BRX8 229 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 COLEC11Q9BWP8 271 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 PCIF1Q9H4Z3 704 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 CACNG4Q9UBN1 327 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 EYSQ5T1H1 3165 aa24.87■■□□□ 1.57
CCDC28B-203ENST00000461819 TTC26A0AVF1 554 aa24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 MEFVO15553 781 aaPredicted RBP24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 LDHAP00338 332 aaKnown RBP24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 NAB2Q15742 525 aa24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 KNOP1Q1ED39 458 aaKnown RBP24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 MICAL1Q8TDZ2 1067 aa24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 RABGGTAQ92696 567 aa24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 ERCC4Q92889 916 aaPredicted RBP24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 ZMAT2Q96NC0 199 aaKnown RBP24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 ENTPD7Q9NQZ7 604 aa24.86■■□□□ 1.57
CCDC28B-203ENST00000461819 LACTBL1A8MY62 500 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 GOLGA6L22H0YM25 854 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 TULP1O00294 542 aaPredicted RBP24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 KIAA0391O15091 583 aaKnown RBP24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 KIF20AO95235 890 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 CAMK1Q14012 370 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 HSP90AA2PQ14568 343 aaPredicted RBP24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 ELOA2Q8IYF1 753 aaPredicted RBP24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 KIF12Q96FN5 646 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 GSDMAQ96QA5 445 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 PAAF1Q9BRP4 392 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 NSUN3Q9H649 340 aaKnown RBP24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 AGPAT3Q9NRZ7 376 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 MARCH5Q9NX47 278 aa24.85■■□□□ 1.57
CCDC28B-203ENST00000461819 MYO7AQ13402 2215 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 GOLGA8IPA6NC78 632 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 GOLGA8JA6NMD2 632 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 TGFB1I1O43294 461 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 CA8P35219 290 aa24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 SNRPFP62306 86 aaKnown RBP24.84■■□□□ 1.57
CCDC28B-203ENST00000461819 SPAG1Q07617 926 aa24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms