RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 SGK1O00141 431 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 NCANO14594 1321 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 SMNDC1O75940 238 aaKnown RBP eCLIP9.63□□□□□ -0.87
COPB1-202ENST00000439561 SPATA31C1P0DKV0 1188 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 RALAP11233 206 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 HARSP12081 509 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 CALB2P22676 271 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 NSFP46459 744 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 POLGP54098 1239 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 GRAPQ13588 217 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 MPP2Q14168 576 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 RASA3Q14644 834 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 FAM98CQ17RN3 349 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 SHROOM1Q2M3G4 852 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 MEX3CQ5U5Q3 659 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 MTDHQ86UE4 582 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 CCDC89Q8N998 374 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 GRAPLQ8TC17 118 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 MAML1Q92585 1016 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 TTC17Q96AE7 1141 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 FAM84AQ96KN4 292 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 NT5C1BQ96P26 610 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 C11orf70Q9BRQ4 267 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 ZNF577Q9BSK1 485 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 TBC1D10AQ9BXI6 508 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 PCYOX1Q9UHG3 505 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 SNUPNO95149 360 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 ZCCHC18P0CG32 403 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 ESRRAP11474 423 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 PIK3CAP42336 1068 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 MAGEA4P43358 317 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 PAPOLAP51003 745 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 DRG2P55039 364 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 GPS1Q13098 491 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 CFAP157Q5JU67 520 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 FAM102BQ5T8I3 360 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 LMBRD2Q68DH5 695 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 LLGL2Q6P1M3 1020 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 NOP9Q86U38 636 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 TBC1D16Q8TBP0 767 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 STK32AQ8WU08 396 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 MAIP1Q8WWC4 291 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 ART4Q93070 314 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 GRAMD1AQ96CP6 724 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 TTC1Q99614 292 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 PI4K2AQ9BTU6 479 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 CCNL1Q9UK58 526 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 CORO1CQ9ULV4 474 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 SUGT1Q9Y2Z0 365 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 SPDYE5A6NIY4 337 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 ATP5HO75947 161 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 KCNA3P22001 575 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 PTDSS1P48651 473 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 PEX3P56589 373 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 NOP14P78316 857 aaKnown RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 BLMHQ13867 455 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 MTFR1Q15390 333 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 LRRC36Q1X8D7 754 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 SPDYCQ5MJ68 293 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 LVRNQ6Q4G3 990 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 CCDC125Q86Z20 511 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 FAM13CQ8NE31 585 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 FBXO41Q8TF61 875 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 ACSF2Q96CM8 615 aaPredicted RBP9.63□□□□□ -0.87
COPB1-202ENST00000439561 FAM20AQ96MK3 541 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 NACC1Q96RE7 527 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 ARHGEF3Q9NR81 526 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 AGTPBP1Q9UPW5 1226 aa9.63□□□□□ -0.87
COPB1-202ENST00000439561 USP54Q70EL1 1684 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 GTPBP10A4D1E9 387 aaKnown RBP9.62□□□□□ -0.87
COPB1-202ENST00000439561 CAPN9O14815 690 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 SLC16A4O15374 487 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 EDIL3O43854 480 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 OPHN1O60890 802 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 HAUS5O94927 633 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 YY1P25490 414 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 FOXN2P32314 431 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 SERPINB4P48594 390 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 MRPS35P82673 323 aaKnown RBP9.62□□□□□ -0.87
COPB1-202ENST00000439561 AP3B2Q13367 1082 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 NLRP9Q7RTR0 991 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 MIER3Q7Z3K6 550 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 CTAGE3PQ8IX95 158 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 ATL2Q8NHH9 583 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 PPP1R14CQ8TAE6 165 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 FGD4Q96M96 766 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 KCNMB3Q9NPA1 279 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 HOMER2Q9NSB8 354 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 CTDP1Q9Y5B0 961 aaPredicted RBP9.62□□□□□ -0.87
COPB1-202ENST00000439561 PHRF1Q9P1Y6 1649 aaKnown RBP9.62□□□□□ -0.87
COPB1-202ENST00000439561 ADAMTS7Q9UKP4 1686 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 SORBS3O60504 671 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 FOSP01100 380 aaPredicted RBP9.62□□□□□ -0.87
COPB1-202ENST00000439561 TAC1P20366 129 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 MARK3P27448 753 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 NT5C2P49902 561 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 PPP3CAQ08209 521 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 PDIA2Q13087 525 aaKnown RBP9.62□□□□□ -0.87
COPB1-202ENST00000439561 STAT4Q14765 748 aa9.62□□□□□ -0.87
COPB1-202ENST00000439561 PKN2Q16513 984 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms