RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 KLK14Q9P0G3 267 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 AGO2Q9UKV8 859 aaKnown RBP13.56□□□□□ -0.24
USP40-205ENST00000430158 ATG2AQ2TAZ0 1938 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 TMEM265A0A087WTH1 108 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 EPOPA6NHQ4 379 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 PPP1R3GB7ZBB8 358 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 PDXKO00764 312 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 DDHD2O94830 711 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 KCNE1P15382 129 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 MLH1P40692 756 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 SCNN1GP51170 649 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 WNT7BP56706 349 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 OSTNP61366 133 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 ZBTB6Q15916 424 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 APBB1IPQ7Z5R6 666 aaPredicted RBP13.55□□□□□ -0.24
USP40-205ENST00000430158 SYCP3Q8IZU3 236 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 FIBCD1Q8N539 461 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 CCDC47Q96A33 483 aaKnown RBP13.55□□□□□ -0.24
USP40-205ENST00000430158 ZMAT2Q96NC0 199 aaKnown RBP13.55□□□□□ -0.24
USP40-205ENST00000430158 ACAP3Q96P50 834 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 PPP1R10Q96QC0 940 aaKnown RBP13.55□□□□□ -0.24
USP40-205ENST00000430158 C17orf80Q9BSJ5 609 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 MSTO1Q9BUK6 570 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 CCDC94Q9BW85 323 aaPredicted RBP13.55□□□□□ -0.24
USP40-205ENST00000430158 NRDE2Q9H7Z3 1164 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 RMND1Q9NWS8 449 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 CNTN3Q9P232 1028 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 PARP2Q9UGN5 583 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 TRAF3IP3Q9Y228 551 aa13.55□□□□□ -0.24
USP40-205ENST00000430158 SMIM28A0A1B0GU29 152 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 C5orf67F2Z3F1 127 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 EFEMP2O95967 443 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 MBD3O95983 291 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 CXCL8P10145 99 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 HARSP12081 509 aaKnown RBP13.54□□□□□ -0.24
USP40-205ENST00000430158 BMPR1AP36894 532 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 ACOT2P49753 483 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 MCCD1P59942 119 aaPredicted RBP13.54□□□□□ -0.24
USP40-205ENST00000430158 NFIL3Q16649 462 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 KYAT1Q16773 422 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 CENPPQ6IPU0 288 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 SLC9A9Q8IVB4 645 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 COLGALT2Q8IYK4 626 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 HACE1Q8IYU2 909 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 LRRC43Q8N309 656 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 POMGNT1Q8WZA1 660 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 TGS1Q96RS0 853 aaKnown RBP13.54□□□□□ -0.24
USP40-205ENST00000430158 GTPBP4Q9BZE4 634 aaKnown RBP13.54□□□□□ -0.24
USP40-205ENST00000430158 GZF1Q9H116 711 aaPredicted RBP13.54□□□□□ -0.24
USP40-205ENST00000430158 NUP62CLQ9H1M0 184 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 ZNF576Q9H609 170 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 PLEKHA5Q9HAU0 1116 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 HSPBP1Q9NZL4 362 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 CGNQ9P2M7 1197 aaKnown RBP13.54□□□□□ -0.24
USP40-205ENST00000430158 MAPK8IP1Q9UQF2 711 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 INPP5FQ9Y2H2 1132 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 PLXNA4Q9HCM2 1894 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 SCN1AP35498 2009 aa13.54□□□□□ -0.24
USP40-205ENST00000430158 LACTBL1A8MY62 500 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 BIN1O00499 593 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 KIAA0391O15091 583 aaKnown RBP13.53□□□□□ -0.24
USP40-205ENST00000430158 CLIC2O15247 247 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 EXTL3O43909 919 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 LPXNO60711 386 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 POMCP01189 267 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 PMS1P54277 932 aaKnown RBP13.53□□□□□ -0.24
USP40-205ENST00000430158 SOX4Q06945 474 aaPredicted RBP13.53□□□□□ -0.24
USP40-205ENST00000430158 MYBPC2Q14324 1141 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 EPC2Q52LR7 807 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 PPP2R2DQ66LE6 453 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 ISM2Q6H9L7 571 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 CD300LGQ6UXG3 332 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 ZC3H3Q8IXZ2 948 aaKnown RBP13.53□□□□□ -0.24
USP40-205ENST00000430158 ABI1Q8IZP0 508 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 TRIML1Q8N9V2 468 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 COLGALT1Q8NBJ5 622 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 SAAL1Q96ER3 474 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 MED15Q96RN5 788 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 MRPL9Q9BYD2 267 aaKnown RBP13.53□□□□□ -0.24
USP40-205ENST00000430158 PCIF1Q9H4Z3 704 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 SLC28A3Q9HAS3 691 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 TMEM63CQ9P1W3 806 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 KANSL3Q9P2N6 904 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 DNAJB4Q9UDY4 337 aa13.53□□□□□ -0.24
USP40-205ENST00000430158 GOLGA8IPA6NC78 632 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 GOLGA8JA6NMD2 632 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 GALTP07902 379 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 IGFBP6P24592 240 aaPredicted RBP13.52□□□□□ -0.25
USP40-205ENST00000430158 SLC11A1P49279 550 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 GRIK3Q13003 919 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 GRIN2CQ14957 1233 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 ARMCX5Q6P1M9 558 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 TMEM173Q86WV6 379 aaPredicted RBP13.52□□□□□ -0.25
USP40-205ENST00000430158 CBWD2Q8IUF1 395 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 BRSK2Q8IWQ3 736 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 GPD1LQ8N335 351 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 TMEM130Q8N3G9 435 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 PLEKHO2Q8TD55 490 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 BCL7CQ8WUZ0 217 aaPredicted RBP13.52□□□□□ -0.25
USP40-205ENST00000430158 FAM213AQ9BRX8 229 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms