RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TRPA1O75762 1119 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PYGMP11217 842 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 DLG4P78352 724 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 KLC1Q07866 573 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 HAUS6Q7Z4H7 955 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 CPNE8Q86YQ8 564 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 CERS5Q8N5B7 392 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PRPF31Q8WWY3 499 aaKnown RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM117Q9H0C3 514 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 MRPL11Q9Y3B7 192 aaKnown RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PRELPP51888 382 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 AP3B2Q13367 1082 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 FYB2Q5VWT5 728 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 KCNV1Q6PIU1 500 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 EPM2AIP1Q7L775 607 aaPredicted RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 SLC47A2Q86VL8 602 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 ACER1Q8TDN7 264 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 EZH1Q92800 747 aaPredicted RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 ZFATQ9P243 1243 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 SHOX2O60902 331 aaPredicted RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 ATP6V1G1O75348 118 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM253P0C7T8 217 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 ARP10275 920 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PIK3CAP42336 1068 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 RPS6KA3P51812 740 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 DMP1Q13316 513 aaPredicted RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PPP2R5DQ14738 602 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 FAM182AQ5T1J6 154 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 AGBL2Q5U5Z8 902 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 ARHGEF18Q6ZSZ5 1173 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PODNQ7Z5L7 613 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 CROCCP2Q86T23 111 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 NLRX1Q86UT6 975 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 LNX1Q8TBB1 728 aaPredicted RBP12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PIP4K2CQ8TBX8 421 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 OSBPL7Q9BZF2 842 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 PRR12Q9ULL5 1215 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 TRIM33Q9UPN9 1127 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 STRCP1A6NGW2 1772 aa12.69□□□□□ -0.38
HMGB1-206ENST00000405805 MIF4GDA9UHW6 222 aaKnown RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 PHF2O75151 1096 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 ATICP31939 592 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 EPHA7Q15375 998 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM270Q6UE05 265 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 RILPQ96NA2 401 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 EXOC7Q9UPT5 735 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 IGSF9BQ9UPX0 1349 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 DENND3A2RUS2 1198 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 EME2A4GXA9 379 aaPredicted RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 PLS3P13797 630 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 MTERF2Q49AM1 385 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 CEP55Q53EZ4 464 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 CC2D2BQ6DHV5 1058 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 LLGL2Q6P1M3 1020 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 CBWD2Q8IUF1 395 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 RAB20Q9NX57 234 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 STK32BQ9NY57 414 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 FAM187AA6NFU0 413 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 F5H423 210 aaPredicted RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 ITGA8P53708 1063 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 BRDTQ58F21 947 aaPredicted RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 SLC27A3Q5K4L6 730 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 TMEM179Q6ZVK1 233 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 SPATA21Q7Z572 469 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 DTX3LQ8TDB6 740 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 ERP27Q96DN0 273 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 ZWILCHQ9H900 591 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 MRGBPQ9NV56 204 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 SEPT9Q9UHD8 586 aaPredicted RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 USP15Q9Y4E8 981 aaPredicted RBP12.68□□□□□ -0.38
HMGB1-206ENST00000405805 USP54Q70EL1 1684 aa12.68□□□□□ -0.38
HMGB1-206ENST00000405805 TCRBV7S2A1N4TA0A589 114 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 POLRMTO00411 1230 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 GJB6O95452 261 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 KRT1P04264 644 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 IL1R1P14778 569 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 MX2P20592 715 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 SERPINB3P29508 390 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 YWHAGP61981 247 aaKnown RBP eCLIP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 BASP1P80723 227 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 DMPKQ09013 629 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 STRN3Q13033 797 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 SEZ6Q53EL9 994 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ARHGEF16Q5VV41 709 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 SCYL2Q6P3W7 929 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 PAF1Q8N7H5 531 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 TTC16Q8NEE8 873 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 RUBCNQ92622 972 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 USP6NLQ92738 828 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 WDR11Q9BZH6 1224 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 CARD9Q9H257 536 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 KCTD10Q9H3F6 313 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 CDC42EP4Q9H3Q1 356 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 RAVER2Q9HCJ3 691 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 ADAM22Q9P0K1 906 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 NXF1Q9UBU9 619 aaKnown RBP12.67□□□□□ -0.38
HMGB1-206ENST00000405805 CREB1P16220 341 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 SHMT1P34896 483 aa12.67□□□□□ -0.38
HMGB1-206ENST00000405805 TMED10P49755 219 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms