RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TMTC1Q8IUR5 882 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 TMEM139Q8IV31 216 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 BRSK2Q8IWQ3 736 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 PPM1KQ8N3J5 372 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 EHBP1Q8NDI1 1231 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 FBXL13Q8NEE6 735 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 BAP1Q92560 729 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 ZNF516Q92618 1163 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 SEMA4DQ92854 862 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 IQCDQ96DY2 449 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 EIF2AQ9BY44 585 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 MTMR12Q9C0I1 747 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 GANQ9H2C0 597 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 DEF6Q9H4E7 631 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 UBE2TQ9NPD8 197 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 PLCB1Q9NQ66 1216 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 DNAJC12Q9UKB3 198 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 AJAP1Q9UKB5 411 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 CPSF3Q9UKF6 684 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 NOC2LQ9Y3T9 749 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 LAMA2P24043 3122 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 USP27XA6NNY8 438 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 CHRNA1P02708 482 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 KRT19P08727 400 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 CLTAP09496 248 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 TMEM191BP0C7N4 346 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 GHRP10912 638 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 PIK3CAP42336 1068 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 TDRD10Q5VZ19 366 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 PHLDB3Q6NSJ2 640 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 PDXDC1Q6P996 788 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 SLC27A1Q6PCB7 646 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 WDR59Q6PJI9 974 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 RAD9BQ6WBX8 426 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 FAM228AQ86W67 206 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 ACAP3Q96P50 834 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 TSEN34Q9BSV6 310 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 NAA15Q9BXJ9 866 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 SENP6Q9GZR1 1112 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 SIX2Q9NPC8 291 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 RAB20Q9NX57 234 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 SNTG2Q9NY99 539 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 APEX2Q9UBZ4 518 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 PLAGL2Q9UPG8 496 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 TRPV2Q9Y5S1 764 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 THSD7BQ9C0I4 1608 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 A0A0U1RQG5 324 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 FAM170AA1A519 330 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 LACTBL1A8MY62 500 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 P4HA2O15460 535 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 B4GALT4O60513 344 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 PQBP1O60828 265 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 TFRCP02786 760 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 AKAP5P24588 427 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 GTF2H1P32780 548 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 DRAP1Q14919 205 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 DUOXA2Q1HG44 320 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 EPC2Q52LR7 807 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 WDR44Q5JSH3 913 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 DNTTIP2Q5QJE6 756 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 SCARA3Q6AZY7 606 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 SPOPLQ6IQ16 392 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 DPY19L2P1Q6NXN4 242 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 SESTD1Q86VW0 696 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 ARHGEF19Q8IW93 802 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 TMEM130Q8N3G9 435 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 LMO3Q8TAP4 145 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 KAT5Q92993 513 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 CCDC42Q96M95 316 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 CGRRF1Q99675 332 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.01□□□□□ -1.77
RTN4-208ENST00000404909 CCDC94Q9BW85 323 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 NXF3Q9H4D5 531 aaKnown RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 NHEJ1Q9H9Q4 299 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 RRAGDQ9NQL2 400 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 PAK6Q9NQU5 681 aaPredicted RBP4.01□□□□□ -1.77
RTN4-208ENST00000404909 PARP2Q9UGN5 583 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 ST3GAL5Q9UNP4 418 aa4.01□□□□□ -1.77
RTN4-208ENST00000404909 ARVCFO00192 962 aa4□□□□□ -1.77
RTN4-208ENST00000404909 DNM1LO00429 736 aa4□□□□□ -1.77
RTN4-208ENST00000404909 AKR1B10O60218 316 aa4□□□□□ -1.77
RTN4-208ENST00000404909 OFD1O75665 1012 aa4□□□□□ -1.77
RTN4-208ENST00000404909 GFPT2O94808 682 aa4□□□□□ -1.77
RTN4-208ENST00000404909 HLA-DRAP01903 254 aa4□□□□□ -1.77
RTN4-208ENST00000404909 TNNC2P02585 160 aa4□□□□□ -1.77
RTN4-208ENST00000404909 C4BPAP04003 597 aaKnown RBP4□□□□□ -1.77
RTN4-208ENST00000404909 NFICP08651 508 aa4□□□□□ -1.77
RTN4-208ENST00000404909 CD52P31358 61 aa4□□□□□ -1.77
RTN4-208ENST00000404909 YARSP54577 528 aaKnown RBP4□□□□□ -1.77
RTN4-208ENST00000404909 KLHL30Q0D2K2 578 aa4□□□□□ -1.77
RTN4-208ENST00000404909 TRPC3Q13507 836 aa4□□□□□ -1.77
RTN4-208ENST00000404909 NCOA4Q13772 614 aa4□□□□□ -1.77
RTN4-208ENST00000404909 ASIC2Q16515 512 aa4□□□□□ -1.77
RTN4-208ENST00000404909 DCAF4L1Q3SXM0 396 aa4□□□□□ -1.77
RTN4-208ENST00000404909 ZACNQ401N2 412 aa4□□□□□ -1.77
RTN4-208ENST00000404909 GLRA4Q5JXX5 417 aa4□□□□□ -1.77
RTN4-208ENST00000404909 ZNF618Q5T7W0 954 aa4□□□□□ -1.77
RTN4-208ENST00000404909 JADE1Q6IE81 842 aa4□□□□□ -1.77
RTN4-208ENST00000404909 APBB1IPQ7Z5R6 666 aaPredicted RBP4□□□□□ -1.77
RTN4-208ENST00000404909 CTU1Q7Z7A3 348 aaKnown RBP4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms