RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 XKR4Q5GH76 650 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 PDE12Q6L8Q7 609 aaKnown RBP20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 EPM2AIP1Q7L775 607 aaPredicted RBP20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 GLIS3Q8NEA6 775 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 SNX27Q96L92 541 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 CXCL16Q9H2A7 254 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 IKZF4Q9H2S9 585 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 RPF1Q9H9Y2 349 aaKnown RBP20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 PLEKHA5Q9HAU0 1116 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 TLR9Q9NR96 1032 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 AGO2Q9UKV8 859 aaKnown RBP20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 PRG3Q9Y2Y8 225 aaPredicted RBP20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 TRIP11Q15643 1979 aa20.72■□□□□ 0.91
PDLIM7-204ENST00000393546 SMIM28A0A1B0GU29 152 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 TISP43B9A030 160 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 GADD45BO75293 160 aaPredicted RBP20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 CSPG5O95196 566 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 PRR29P0C7W0 189 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 GARTP22102 1010 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 DPYDQ12882 1025 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 BMS1Q14692 1282 aaKnown RBP20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 SLC10A6Q3KNW5 377 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 TIGD1Q96MW7 591 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 PPP1R10Q96QC0 940 aaKnown RBP20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 NSUN3Q9H649 340 aaKnown RBP20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 STK39Q9UEW8 545 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 HOOK1Q9UJC3 728 aaKnown RBP20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 CITO14578 2027 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 PLXNA4Q9HCM2 1894 aa20.71■□□□□ 0.91
PDLIM7-204ENST00000393546 MYO7AQ13402 2215 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 KCNE1P15382 129 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 ADSSP30520 456 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 TNFSF9P41273 254 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 ERVFC1P60507 584 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 GLRA4Q5JXX5 417 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 TMC7Q7Z402 723 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 DDX53Q86TM3 631 aaKnown RBP20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 TMEM173Q86WV6 379 aaPredicted RBP20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 PPP2R3CQ969Q6 453 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 NGRNQ9NPE2 291 aaKnown RBP20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 SLC38A7Q9NVC3 462 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 CNTN3Q9P232 1028 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 CPSF3Q9UKF6 684 aaKnown RBP20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 UBE4BO95155 1302 aa20.7■□□□□ 0.9
PDLIM7-204ENST00000393546 FAM189A1O60320 539 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 LDHAP00338 332 aaKnown RBP20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 CXCL8P10145 99 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 IRS1P35568 1242 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 ACOT2P49753 483 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 UBE2HP62256 183 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 SKIV2LQ15477 1246 aaKnown RBP20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 NAB2Q15742 525 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 ZBTB41Q5SVQ8 909 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 BCL7CQ8WUZ0 217 aaPredicted RBP20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 SCFD1Q8WVM8 642 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 ZMAT2Q96NC0 199 aaKnown RBP20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 TCF25Q9BQ70 676 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 ENTPD7Q9NQZ7 604 aa20.69■□□□□ 0.9
PDLIM7-204ENST00000393546 TTC26A0AVF1 554 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 CASTOR2A6NHX0 329 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 LACTBL1A8MY62 500 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 KINO60870 393 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 PRPF40AO75400 957 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 TADA2AO75478 443 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 HOXD13P35453 343 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 POU5F1Q01860 360 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 PPP2R3AQ06190 1150 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 STK4Q13043 487 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 HSP90AA2PQ14568 343 aaPredicted RBP20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 ENOX2Q16206 610 aaKnown RBP20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 TCEAL5Q5H9L2 206 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 ARMCX5Q6P1M9 558 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 CD302Q8IX05 232 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 NELFCDQ8IXH7 590 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 VPS52Q8N1B4 723 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 FAM212AQ96EL1 285 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 UROC1Q96N76 676 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 TSPAN18Q96SJ8 248 aa20.68■□□□□ 0.9
PDLIM7-204ENST00000393546 FSCN2O14926 492 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 KIAA0391O15091 583 aaKnown RBP20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 MEFVO15553 781 aaPredicted RBP20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 RHOBTB3O94955 611 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 ADRB2P07550 413 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 SNRPFP62306 86 aaKnown RBP20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 PNOCQ13519 176 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 KCNB1Q14721 858 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 BMT2Q1RMZ1 405 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 PLPP4Q5VZY2 271 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 CLEC17AQ6ZS10 378 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 ELOA2Q8IYF1 753 aaPredicted RBP20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 RABGGTAQ92696 567 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 DDX27Q96GQ7 796 aaKnown RBP20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 PCIF1Q9H4Z3 704 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 MARCH5Q9NX47 278 aa20.67■□□□□ 0.9
PDLIM7-204ENST00000393546 KIF20AO95235 890 aa20.66■□□□□ 0.9
PDLIM7-204ENST00000393546 SMC2O95347 1197 aa20.66■□□□□ 0.9
PDLIM7-204ENST00000393546 CXCL14O95715 111 aa20.66■□□□□ 0.9
PDLIM7-204ENST00000393546 SMC1AQ14683 1233 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-204ENST00000393546 KNOP1Q1ED39 458 aaKnown RBP20.66■□□□□ 0.9
PDLIM7-204ENST00000393546 DCLRE1AQ6PJP8 1040 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms