RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 KCTD10Q9H3F6 313 aa12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 CWH43Q9H720 699 aa12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 NRDE2Q9H7Z3 1164 aa12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 RPF1Q9H9Y2 349 aaKnown RBP12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 GOLGA2P5Q9HBQ8 144 aa12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 ALG13Q9NP73 1137 aaKnown RBP12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 PRG3Q9Y2Y8 225 aaPredicted RBP12.77□□□□□ -0.37
DEPDC4-202ENST00000378244 SMIM28A0A1B0GU29 152 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 EPOPA6NHQ4 379 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 CASTOR2A6NHX0 329 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 F8W810 466 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 THP07101 528 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 LINC00271P0C7V0 271 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 CD44P16070 742 aaKnown RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 ALDH7A1P49419 539 aaKnown RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 CAVIN1Q6NZI2 390 aaKnown RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 CRELD2Q6UXH1 353 aaPredicted RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 CBWD2Q8IUF1 395 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 GUF1Q8N442 669 aaKnown RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 KANSL3Q9P2N6 904 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 CPSF3Q9UKF6 684 aaKnown RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 COL4A6Q14031 1691 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 REV3LO60673 3130 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 TRIM49BA6NDI0 452 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 LACTBL1A8MY62 500 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 EXOC3O60645 756 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 KIF20AO95235 890 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 GARTP22102 1010 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 BMPR1AP36894 532 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 OR1G1P47890 313 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 MORC3Q14149 939 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 KCNT2Q6UVM3 1135 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 TMEM173Q86WV6 379 aaPredicted RBP12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 SNX27Q96L92 541 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 SEMA6BQ9H3T3 888 aa12.76□□□□□ -0.37
DEPDC4-202ENST00000378244 UBE4BO95155 1302 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 PMS1P54277 932 aaKnown RBP12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 WNT7BP56706 349 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 BCAR1P56945 870 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 PPP2R3AQ06190 1150 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 CEP135Q66GS9 1140 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 GPD1LQ8N335 351 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 KLHL23Q8NBE8 558 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 HASPINQ8TF76 798 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 GDPD5Q8WTR4 605 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 CLP1Q92989 425 aaKnown RBP12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 C18orf25Q96B23 403 aaPredicted RBP12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 RBAKQ9NYW8 714 aaPredicted RBP12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 TMEM63CQ9P1W3 806 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 PCDHB12Q9Y5F1 795 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 MYO7AQ13402 2215 aa12.75□□□□□ -0.37
DEPDC4-202ENST00000378244 TTC26A0AVF1 554 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 PDXKO00764 312 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 CASP4P49662 377 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 STX17P56962 302 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 ERVK-21P61565 698 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 ALKAL1Q6UXT8 129 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 ADSSL1Q8N142 457 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 XXYLT1Q8NBI6 393 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 FBXO22Q8NEZ5 403 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 CCDC127Q96BQ5 260 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 KIF12Q96FN5 646 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 PDE11AQ9HCR9 933 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 EXTL3O43909 919 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 LDHAP00338 332 aaKnown RBP12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 NR3C1P04150 777 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 ALDH2P05091 517 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 NR2F2P24468 414 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 IGFBP6P24592 240 aaPredicted RBP12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 SLC11A1P49279 550 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 GUCY2FP51841 1108 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 SOX4Q06945 474 aaPredicted RBP12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 GRIK3Q13003 919 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 SNRNP35Q16560 246 aaKnown RBP12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 LMBRD2Q68DH5 695 aaPredicted RBP12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 JADE1Q6IE81 842 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 COLGALT1Q8NBJ5 622 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 ZNF558Q96NG5 402 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 TUBGCP4Q9UGJ1 667 aa12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 FNDC1Q4ZHG4 1894 aaPredicted RBP12.74□□□□□ -0.37
DEPDC4-202ENST00000378244 ZNF233A6NK53 670 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 PPP1R3GB7ZBB8 358 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 NRP1O14786 923 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 PSMA7O14818 248 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 FGF18O76093 207 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 GALTP07902 379 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 NFICP08651 508 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 DLATP10515 647 aaKnown RBP12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 LAG3P18627 525 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 IGFBP4P22692 258 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 STIM1Q13586 685 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 DPCR1Q3MIW9 517 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 ANKRD40Q6AI12 368 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 COLGALT2Q8IYK4 626 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 PPP1R10Q96QC0 940 aaKnown RBP12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 AAASQ9NRG9 546 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 CNTN3Q9P232 1028 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 CTNND2Q9UQB3 1225 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 FAN1Q9Y2M0 1017 aa12.73□□□□□ -0.37
DEPDC4-202ENST00000378244 CALUO43852 315 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms