RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 BIRC5O15392 142 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 CLASP2O75122 1294 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 CIITAP33076 1130 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 PARP10Q53GL7 1025 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 SPDYAQ5MJ70 313 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 FAM193BQ96PV7 902 aaPredicted RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 KRT84Q9NSB2 600 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 NXF1Q9UBU9 619 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 NCK2O43639 380 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 PDE8AO60658 829 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 S100A6P06703 90 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 LRRC74AQ0VAA2 488 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 SCUBE1Q8IWY4 988 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 HEXIM2Q96MH2 286 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 PCIF1Q9H4Z3 704 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 TNFAIP8O95379 198 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 CD2BP2O95400 341 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 MAPK11Q15759 364 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 LONRF1Q17RB8 773 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 DDX56Q9NY93 547 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 CD58P19256 250 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 OR6B2Q6IFH4 312 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 PDCD10Q9BUL8 212 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 SARS2Q9NP81 518 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 SURF1Q15526 300 aa16.05■□□□□ 0.16
COL5A1-201ENST00000371817 RNPC3Q96LT9 517 aaKnown RBP16.05■□□□□ 0.16
COL5A1-201ENST00000371817 IFT140Q96RY7 1462 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 PIK3R1P27986 724 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 IFNEQ86WN2 208 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 FBXO11Q86XK2 927 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 APOL6Q9BWW8 343 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 RFX1P22670 979 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 FAM160B1Q5W0V3 765 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 ARMCX2Q7L311 632 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 ATXN7L3BQ96GX2 97 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 SLC8A2Q9UPR5 921 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 FOSP01100 380 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-201ENST00000371817 KIAA1755Q5JYT7 1200 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 TSHZ1Q6ZSZ6 1077 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 MAPKAPK5Q8IW41 473 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 MAGED4Q96JG8 741 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 C1orf50Q9BV19 199 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 MANSC1Q9H8J5 431 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 H7C0S8 307 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 SASH1O94885 1247 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 ZNF211Q13398 564 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-201ENST00000371817 TMEM63BQ5T3F8 832 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 ARL6IP4Q66PJ3 421 aaKnown RBP16.04■□□□□ 0.16
COL5A1-201ENST00000371817 KIFC1Q9BW19 673 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 EURLQ9NYK6 297 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 SNTNA6NMZ2 147 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 ATXN8OSP0DMR3 200 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 DHX40Q8IX18 779 aaKnown RBP16.04■□□□□ 0.16
COL5A1-201ENST00000371817 C17orf50Q8WW18 174 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 UBA2Q9UBT2 640 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-201ENST00000371817 SERPINB13Q9UIV8 391 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 TAF2Q6P1X5 1199 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 SLC7A3Q8WY07 619 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 C6orf62Q9GZU0 229 aaPredicted RBP16.04■□□□□ 0.16
COL5A1-201ENST00000371817 USP44Q9H0E7 712 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 PIGUQ9H490 435 aa16.04■□□□□ 0.16
COL5A1-201ENST00000371817 ATP9AO75110 1047 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 ATP6V1G2O95670 118 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 HOXB7P09629 217 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 PLA2G4AP47712 749 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 MMRN1Q13201 1228 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 RBM17Q96I25 401 aaKnown RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 CYLDQ9NQC7 956 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 IARS2Q9NSE4 1012 aaKnown RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 POLA2Q14181 598 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 CCNI2Q6ZMN8 369 aaPredicted RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 METTL23Q86XA0 190 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 MS4A14Q96JA4 679 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 ZNF577Q9BSK1 485 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 ROPN1BQ9BZX4 212 aaPredicted RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 ROPN1Q9HAT0 212 aaPredicted RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 LGALS3BPQ08380 585 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 C1DQ13901 141 aaKnown RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 MXD3Q9BW11 206 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 USP17L12C9JPN9 530 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 USP17L21D6R901 530 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 UFL1O94874 794 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 MYL2P10916 166 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 NUDT2P50583 147 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 IP6K2Q9UHH9 426 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 ABCB1P08183 1280 aaPredicted RBP16.03■□□□□ 0.16
COL5A1-201ENST00000371817 OSBPP22059 807 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 SEC24CP53992 1094 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 C12orf60Q5U649 245 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 POTEEQ6S8J3 1075 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 MAP3K19Q56UN5 1328 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 ZNF185O15231 689 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 RGS21Q2M5E4 152 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 SLC9A2Q9UBY0 812 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 PCDHA1Q9Y5I3 950 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 SYCP2LQ5T4T6 812 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 LRRC31Q6UY01 552 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 SERHL2Q9H4I8 314 aa16.03■□□□□ 0.16
COL5A1-201ENST00000371817 SERHLQ9NQF3 203 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms