RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZGPATQ8N5A5 531 aaKnown RBP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 CEP95Q96GE4 821 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 TMEM176AQ96HP8 235 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 CDK5RAP3Q96JB5 506 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 RBM15Q96T37 977 aaKnown RBP eCLIP4.3□□□□□ -1.72
HMGB1-201ENST00000326004 KCNH6Q9H252 994 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 HDAC5Q9UQL6 1122 aa4.3□□□□□ -1.72
HMGB1-201ENST00000326004 TBKBP1A7MCY6 615 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 CXorf49A8MYA2 514 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-201ENST00000326004 FOXS1O43638 330 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 TUSC2O75896 110 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 STC2O76061 302 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 UBXN7O94888 489 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ALDH2P05091 517 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 FTH1P19P0C7X4 201 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 RAP2AP10114 183 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ATP5JP18859 108 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 FPR1P21462 350 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 COMTP21964 271 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 MSX2P35548 267 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ALDH1A3P47895 512 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 MAP2K6P52564 334 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 HK3P52790 923 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 CLRN1P58418 232 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 NOGQ13253 232 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 FZD5Q13467 585 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ELAVL1Q15717 326 aaKnown RBP4.29□□□□□ -1.72
HMGB1-201ENST00000326004 KHDC1Q4VXA5 237 aaKnown RBP4.29□□□□□ -1.72
HMGB1-201ENST00000326004 HS1BP3Q53T59 392 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 CCDC157Q569K6 752 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 DACT2Q5SW24 774 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 LCE3BQ5TA77 95 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 CCSAPQ6IQ19 270 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-201ENST00000326004 SEM1Q6ZVN7 128 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 LIMS2Q7Z4I7 341 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 SRGAP1Q7Z6B7 1085 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 KRTAP1-3Q8IUG1 177 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ZBTB34Q8NCN2 500 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 MDGA1Q8NFP4 955 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 DNERQ8NFT8 737 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ST8SIA2Q92186 375 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 MIEF2Q96C03 454 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 DMRTA2Q96SC8 542 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 CGRRF1Q99675 332 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 C11orf54Q9H0W9 315 aaPredicted RBP4.29□□□□□ -1.72
HMGB1-201ENST00000326004 FAM204AQ9H8W3 233 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 FAM30AQ9NZY2 134 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 STXBP5LQ9Y2K9 1186 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 SH3BP1Q9Y3L3 701 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 ACTL7AQ9Y615 435 aa4.29□□□□□ -1.72
HMGB1-201ENST00000326004 PRR5-ARHGAP8B1AHC4 643 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FAM227AF5H4B4 570 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 CYP27B1O15528 508 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 B3GALT2O43825 422 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 ZNF623O75123 536 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 CAND2O75155 1236 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 ALAS1P13196 640 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 MALP21145 153 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 GNALP38405 381 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 TBX4P57082 545 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 CREMQ03060 361 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 BMT2Q1RMZ1 405 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FAM214AQ32MH5 1076 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FBLN7Q53RD9 439 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 DCAF17Q5H9S7 520 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 DRICH1Q6PGQ1 229 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 SLC4A10Q6U841 1118 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 OVCH2Q7RTZ1 564 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 GPRIN1Q7Z2K8 1008 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 TTC9BQ8N6N2 239 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FBXO18Q8NFZ0 1043 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 ZFP28Q8NHY6 868 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 CXorf38Q8TB03 319 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 Q8TCH9 128 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 STON2Q8WXE9 905 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 RAB24Q969Q5 203 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 MTFMTQ96DP5 389 aaKnown RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FAM89AQ96GI7 184 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 CPPED1Q9BRF8 314 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 BDH2Q9BUT1 245 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 MRI1Q9BV20 369 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 LSM14BQ9BX40 385 aaKnown RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 TMEM60Q9H2L4 133 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 WDCPQ9H6R7 721 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 LMBRD1Q9NUN5 540 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 GNL3LQ9NVN8 582 aaKnown RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 SIDT1Q9NXL6 827 aaKnown RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 GABBR1Q9UBS5 961 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FEZ2Q9UHY8 353 aaPredicted RBP4.28□□□□□ -1.72
HMGB1-201ENST00000326004 NR2E3Q9Y5X4 410 aa4.28□□□□□ -1.72
HMGB1-201ENST00000326004 FRMPD2Q68DX3 1309 aaPredicted RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 A0A088AWK7 358 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 CAPN14A8MX76 684 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 AMHP03971 560 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 HRGP04196 525 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 MTHFD1P11586 935 aaKnown RBP4.27□□□□□ -1.73
HMGB1-201ENST00000326004 MGAT1P26572 445 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 HTR1BP28222 390 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 SMARCA1P28370 1054 aa4.27□□□□□ -1.73
HMGB1-201ENST00000326004 AGFG1P52594 562 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms