RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PIK3CAP42336 1068 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 PAK2Q13177 524 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 BIRC3Q13489 604 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 CLUL1Q15846 466 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 IER5Q5VY09 327 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 CRELD2Q6UXH1 353 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 CAVIN3Q969G5 261 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 ZBTB45Q96K62 511 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 PI4K2AQ9BTU6 479 aa13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 TTC7AQ9ULT0 858 aaPredicted RBP13.91□□□□□ -0.18
SPTLC1-201ENST00000262554 LOC102724159A0A0B4J2E5 919 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 DDX3YO15523 660 aaKnown RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 RAD51CO43502 376 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 MTA2O94776 668 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 C4BPAP04003 597 aaKnown RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 NNTQ13423 1086 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 SNAPC2Q13487 334 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 MXD4Q14582 209 aaPredicted RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 PWP2Q15269 919 aaKnown RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 LMBRD2Q68DH5 695 aaPredicted RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 GPAT2Q6NUI2 795 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 PLPPR4Q7Z2D5 763 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 DHX37Q8IY37 1157 aaKnown RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 PRPF31Q8WWY3 499 aaKnown RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 DHX38Q92620 1227 aaKnown RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 SPATA33Q96N06 139 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 NAP1L3Q99457 506 aaPredicted RBP13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 HAPLN2Q9GZV7 340 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 CARD9Q9H257 536 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 ACP6Q9NPH0 428 aa13.9□□□□□ -0.18
SPTLC1-201ENST00000262554 MIF4GDA9UHW6 222 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 MARK3P27448 753 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 BPIFB4P59827 614 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ERVK-9P63128 1117 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 HSDL1Q3SXM5 330 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 TDRD10Q5VZ19 366 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ZPBP2Q6X784 338 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 UBL4BQ8N7F7 174 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 SHCBP1Q8NEM2 672 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 MORC4Q8TE76 937 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ATP8B4Q8TF62 1192 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 IFT81Q8WYA0 676 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 CGRRF1Q99675 332 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 AP1M1Q9BXS5 423 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 VPS18Q9P253 973 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 PNMA3Q9UL41 463 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ALG6Q9Y672 507 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 GOLGA6BA6NDN3 693 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 CLDN3O15551 220 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 CYP1A2P05177 515 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 PYGBP11216 843 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 PRKAR2AP13861 404 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 DRP2Q13474 957 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 EAPPQ56P03 285 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ACAD10Q6JQN1 1059 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ZBTB8OSQ8IWT0 167 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 FBXO16Q8IX29 292 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 GTF3C2Q8WUA4 911 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 DDX1Q92499 740 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ELMO3Q96BJ8 720 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ZNF653Q96CK0 615 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 RPS6KC1Q96S38 1066 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 JPH2Q9BR39 696 aaPredicted RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 MRPL4Q9BYD3 311 aaKnown RBP13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 SLITRK6Q9H5Y7 841 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 GTF3C4Q9UKN8 822 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 ADGRA2Q96PE1 1338 aa13.89□□□□□ -0.19
SPTLC1-201ENST00000262554 SCN4AP35499 1836 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 ASB14A6NK59 587 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 TMEM110-MUSTN1A8MSY1 372 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 SART1O43290 800 aaKnown RBP13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 FGGP02679 453 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 CARSP49589 748 aaKnown RBP13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 SLC26A2P50443 739 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 WNT7BP56706 349 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 LAMTOR4Q0VGL1 99 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 TTLL4Q14679 1199 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 LDLRAD1Q5T700 205 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 CDCA2Q69YH5 1023 aaPredicted RBP13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 CCDC62Q6P9F0 684 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 ZNF677Q86XU0 584 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 EIF1ADQ8N9N8 165 aaKnown RBP13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 CCDC26Q8TAB7 109 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 ZBTB9Q96C00 473 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 SLC10A4Q96EP9 437 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 FAM84AQ96KN4 292 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 RNPC3Q96LT9 517 aaKnown RBP13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 NUP85Q9BW27 656 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 C2orf40Q9H1Z8 148 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 SMARCAD1Q9H4L7 1026 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 PLEKHA4Q9H4M7 779 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 UVRAGQ9P2Y5 699 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 ADAM21Q9UKJ8 722 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 NFU1Q9UMS0 254 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 FAN1Q9Y2M0 1017 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 PCDHB2Q9Y5E7 798 aa13.88□□□□□ -0.19
SPTLC1-201ENST00000262554 GOLGA6L10A0A0M3HER8 536 aa13.87□□□□□ -0.19
SPTLC1-201ENST00000262554 ESYT3A0FGR9 886 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms