RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 AGAP1Q9UPQ3 857 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 NTSR2O95665 410 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 SLC25A27O95847 323 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 RPSAP08865 295 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 GMPSP49915 693 aaPredicted RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 EXOSC10Q01780 885 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 XKR3Q5GH77 459 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 CCDC137Q6PK04 289 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 PPM1NQ8N819 430 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 C1orf54Q8WWF1 131 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 ELAC2Q9BQ52 826 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 TEX12Q9BXU0 123 aa9.21□□□□□ -0.93
PTCD3-201ENST00000254630 LSM7Q9UK45 103 aaKnown RBP9.21□□□□□ -0.93
PTCD3-201ENST00000254630 KCNN4O15554 427 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 GCKP35557 465 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 BCAR1P56945 870 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 TBCCQ15814 346 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 IZUMO3Q5VZ72 239 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 NUGGCQ68CJ6 796 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 TTC23LQ6PF05 361 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 STOX1Q6ZVD7 989 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 RMDN1Q96DB5 314 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 DCUN1D1Q96GG9 259 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 C7orf25Q9BPX7 421 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 LBHD1Q9BQE6 289 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-201ENST00000254630 SPON2Q9BUD6 331 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 MOV10L1Q9BXT6 1211 aaKnown RBP9.21□□□□□ -0.94
PTCD3-201ENST00000254630 TEX13BQ9BXU2 312 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 TEKT2Q9UIF3 430 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 CAPN11Q9UMQ6 739 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 ALDH1A1P00352 501 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 CD4P01730 458 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 PRKCEQ02156 737 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 TMEM62Q0P6H9 643 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 TAF11Q15544 211 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 SMAD1Q15797 465 aaKnown RBP9.21□□□□□ -0.94
PTCD3-201ENST00000254630 KRT80Q6KB66 452 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 ASAP3Q8TDY4 903 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 RFFLQ8WZ73 363 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 CEP19Q96LK0 163 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 KCND2Q9NZV8 630 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 A0A1W2PQC6 194 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 NDUFB10O96000 172 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 ARSEP51690 589 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 GOLGA7BQ2TAP0 167 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 BEND6Q5SZJ8 279 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-201ENST00000254630 RNF135Q8IUD6 432 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 CPA5Q8WXQ8 436 aa9.21□□□□□ -0.94
PTCD3-201ENST00000254630 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.21□□□□□ -0.94
PTCD3-201ENST00000254630 SCHIP1Q9P0W5 487 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-201ENST00000254630 POLRMTO00411 1230 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DYNC1LI2O43237 492 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SYF2O95926 243 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DGKDQ16760 1214 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 EXOC4Q96A65 974 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CLMNQ96JQ2 1002 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SEPT5Q99719 369 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 APEX2Q9UBZ4 518 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 RPS6KA5O75582 802 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DGAT1O75907 488 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 RARBP10826 455 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 RPS12P25398 132 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 GGCXP38435 758 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 RAD51Q06609 339 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DHX34Q14147 1143 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 STILQ15468 1287 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SYDE1Q6ZW31 735 aaPredicted RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ATPAF2Q8N5M1 289 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CHST13Q8NET6 341 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 NRBF2Q96F24 287 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 MED15Q96RN5 788 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 KIFC3Q9BVG8 833 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SMYD3Q9H7B4 428 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SLC38A7Q9NVC3 462 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 PRR12Q9ULL5 1215 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SLC4A7Q9Y6M7 1214 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 MROH2AA6NES4 1674 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 TECPR2O15040 1411 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 TBX3O15119 743 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DPYDQ12882 1025 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 TSGA10IPQ3SY00 556 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ANKS3Q6ZW76 656 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DDIASQ8IXT1 998 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 GPRC5AQ8NFJ5 357 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SENP7Q9BQF6 1050 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 MXRA8Q9BRK3 442 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 MUC3BQ9H195 1237 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 EEF2KO00418 725 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 TADA3O75528 432 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 CELF2O95319 508 aaKnown RBP9.2□□□□□ -0.94
PTCD3-201ENST00000254630 HMBSP08397 361 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 DPEP1P16444 411 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ACOT2P49753 483 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 FCGRTP55899 365 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ATF7IP2Q5U623 682 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 RASIP1Q5U651 963 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 RGS9BPQ6ZS82 235 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 LCA5Q86VQ0 697 aa9.2□□□□□ -0.94
PTCD3-201ENST00000254630 ATP11CQ8NB49 1132 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms