RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MRPS9P82933 396 aaKnown RBP5.91□□□□□ -1.46
CD44-239ENST00000639002 FAM47AQ5JRC9 791 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 ARHGEF19Q8IW93 802 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 DNAJC10Q8IXB1 793 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 TRMT2AQ8IZ69 625 aaKnown RBP5.91□□□□□ -1.46
CD44-239ENST00000639002 BEND2Q8NDZ0 799 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 GPR156Q8NFN8 814 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 ZNF480Q8WV37 535 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 QRSL1Q9H0R6 528 aaKnown RBP5.91□□□□□ -1.46
CD44-239ENST00000639002 SERHL2Q9H4I8 314 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 PACSIN3Q9UKS6 424 aa5.91□□□□□ -1.46
CD44-239ENST00000639002 PCSK5Q92824 1860 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 GOLGA8AA7E2F4 631 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 CXorf49A8MYA2 514 aaPredicted RBP5.9□□□□□ -1.46
CD44-239ENST00000639002 HSD3B2P26439 372 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 FLT3LGP49771 235 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 PPP3CAQ08209 521 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 STAT4Q14765 748 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 ADRM1Q16186 407 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 MUM1Q2TAK8 710 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 EFCAB12Q6NXP0 572 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 TFAP2CQ92754 450 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 HOXB13Q92826 284 aaPredicted RBP5.9□□□□□ -1.46
CD44-239ENST00000639002 PAWRQ96IZ0 340 aaKnown RBP5.9□□□□□ -1.46
CD44-239ENST00000639002 ADAM2Q99965 735 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 WDR11Q9BZH6 1224 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 POGKQ9P215 609 aa5.9□□□□□ -1.46
CD44-239ENST00000639002 GAGE12BA1L429 117 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 GAGE12HA6NDE8 117 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 DRGXA6NNA5 263 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 DIRC3C9JPN6 131 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 AKR1B10O60218 316 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 PHF2O75151 1096 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 PPFIA4O75335 1185 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 LMNAP02545 664 aaKnown RBP5.89□□□□□ -1.47
CD44-239ENST00000639002 RBP3P10745 1247 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 BMP5P22003 454 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 TGM1P22735 817 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 BMPR1AP36894 532 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 GPR3P46089 330 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 SCAND1P57086 179 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 SDE2Q6IQ49 451 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 Q6YL49 198 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 ZNF572Q7Z3I7 529 aaPredicted RBP5.89□□□□□ -1.47
CD44-239ENST00000639002 FBXO18Q8NFZ0 1043 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 OR7D4Q8NG98 312 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 SYNPO2LQ9H987 977 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 IFT122Q9HBG6 1241 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 SYBUQ9NX95 663 aa5.89□□□□□ -1.47
CD44-239ENST00000639002 MARCH11A6NNE9 402 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 B3GALT2O43825 422 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 BRINP1O60477 761 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 ALOX15P16050 662 aaPredicted RBP5.88□□□□□ -1.47
CD44-239ENST00000639002 PTPN7P35236 360 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 SOX5P35711 763 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 SREBF1P36956 1147 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 CHN2P52757 468 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 TOR2AQ5JU69 321 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 HECTD2Q5U5R9 776 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 PDZD4Q76G19 769 aaPredicted RBP5.88□□□□□ -1.47
CD44-239ENST00000639002 CPEB3Q8NE35 698 aaKnown RBP5.88□□□□□ -1.47
CD44-239ENST00000639002 AUTS2Q8WXX7 1259 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 TOR3AQ9H497 397 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 BCO1Q9HAY6 547 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 DMRT3Q9NQL9 472 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 USP35Q9P2H5 1018 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 MAP3K2Q9Y2U5 619 aa5.88□□□□□ -1.47
CD44-239ENST00000639002 USP15Q9Y4E8 981 aaPredicted RBP5.88□□□□□ -1.47
CD44-239ENST00000639002 PJA2O43164 708 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 ELANEP08246 267 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 POU3F3P20264 500 aaPredicted RBP5.87□□□□□ -1.47
CD44-239ENST00000639002 MGAT1P26572 445 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 CLRN1P58418 232 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 SRSF2Q01130 221 aaKnown RBP5.87□□□□□ -1.47
CD44-239ENST00000639002 PLXDC1Q8IUK5 500 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 CHAC2Q8WUX2 184 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 FATE1Q969F0 183 aa5.87□□□□□ -1.47
CD44-239ENST00000639002 FAM126AQ9BYI3 521 aaPredicted RBP5.87□□□□□ -1.47
CD44-239ENST00000639002 EPN1Q9Y6I3 576 aaPredicted RBP5.87□□□□□ -1.47
CD44-239ENST00000639002 UNC119BA6NIH7 251 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 PRKD3O94806 890 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 RHOBTB3O94955 611 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 TMPRSS15P98073 1019 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 TP53BP2Q13625 1128 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 ATXN7L2Q5T6C5 722 aaPredicted RBP5.86□□□□□ -1.47
CD44-239ENST00000639002 AGAP9Q5VTM2 703 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 OLFML1Q6UWY5 402 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 ZFP28Q8NHY6 868 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 STON2Q8WXE9 905 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 GREM2Q9H772 168 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 C14orf119Q9NWQ9 140 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 SIK3Q9Y2K2 1263 aa5.86□□□□□ -1.47
CD44-239ENST00000639002 PIPSLA2A3N6 862 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 CCDC78A2IDD5 438 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 VIL1P09327 827 aaKnown RBP5.85□□□□□ -1.47
CD44-239ENST00000639002 GUCY1A2P33402 732 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 MCAMP43121 646 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 SLC6A9P48067 706 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 TAP1Q03518 808 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 SCAPQ12770 1279 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms