RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OSBPL7Q9BZF2 842 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 GPR88Q9GZN0 384 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 PABPC3Q9H361 631 aaKnown RBP14.24□□□□□ -0.13
VPS4A-204ENST00000566354 PARVGQ9HBI0 331 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.24□□□□□ -0.13
VPS4A-204ENST00000566354 SEL1LQ9UBV2 794 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 APEX2Q9UBZ4 518 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 PNMA2Q9UL42 364 aa14.24□□□□□ -0.13
VPS4A-204ENST00000566354 CCL15-CCL14A0A0B4J2E2 113 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 CHUKO15111 745 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 CYP2C8P10632 490 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 RFX1P22670 979 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 PMS2P54278 862 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 HADHBP55084 474 aaKnown RBP14.23□□□□□ -0.13
VPS4A-204ENST00000566354 CCL15Q16663 113 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 LACTB2Q53H82 288 aaPredicted RBP14.23□□□□□ -0.13
VPS4A-204ENST00000566354 ERMARDQ5T6L9 678 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 RNF207Q6ZRF8 634 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 RHOT2Q8IXI1 618 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 BRI3BPQ8WY22 251 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 CHMP6Q96FZ7 201 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 PGM2Q96G03 612 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 TXNRD2Q9NNW7 524 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 SLC40A1Q9NP59 571 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 DMAC2Q9NW81 257 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 RASAL2Q9UJF2 1139 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 PASKQ96RG2 1323 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 IGSF9BQ9UPX0 1349 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 CCDC169A6NNP5 214 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 HSPA6P17066 643 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 GBP1P32455 592 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 MAPK7Q13164 816 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 BAATQ14032 418 aaPredicted RBP14.23□□□□□ -0.13
VPS4A-204ENST00000566354 KIF22Q14807 665 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 ZC2HC1CQ53FD0 456 aaPredicted RBP14.23□□□□□ -0.13
VPS4A-204ENST00000566354 ANKRD20A8PQ5CZ79 823 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 ZNF720Q7Z2F6 126 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 NEK9Q8TD19 979 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 PIGOQ8TEQ8 1089 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 XPO6Q96QU8 1125 aaKnown RBP14.23□□□□□ -0.13
VPS4A-204ENST00000566354 INTS2Q9H0H0 1204 aaKnown RBP14.23□□□□□ -0.13
VPS4A-204ENST00000566354 THAP2Q9H0W7 228 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 R3HDMLQ9H3Y0 253 aa14.23□□□□□ -0.13
VPS4A-204ENST00000566354 MIF4GDA9UHW6 222 aaKnown RBP14.22□□□□□ -0.13
VPS4A-204ENST00000566354 BTBD19C9JJ37 291 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 DNM1LO00429 736 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CAND2O75155 1236 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CNMDO75829 334 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 SLITRK3O94933 977 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CETPP11597 493 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 DRD4P21917 467 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 GTF2A2P52657 109 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 PPARDQ03181 441 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CTTNQ14247 550 aaKnown RBP14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CBWD6Q4V339 395 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CBWD3Q5JTY5 395 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CBWD5Q5RIA9 395 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 OTOP1Q7RTM1 612 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 ANKRD23Q86SG2 305 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 CROCCP2Q86T23 111 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 JAMLQ86YT9 394 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 TPH2Q8IWU9 490 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 IL31RAQ8NI17 732 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 ARHGEF26Q96DR7 871 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 TAAR1Q96RJ0 339 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 SYNGAP1Q96PV0 1343 aa14.22□□□□□ -0.13
VPS4A-204ENST00000566354 KIAA0391O15091 583 aaKnown RBP14.21□□□□□ -0.13
VPS4A-204ENST00000566354 OSBPP22059 807 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 DENND2CQ68D51 928 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 SAPCD2Q86UD0 394 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 GLG1Q92896 1179 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 FAM129AQ9BZQ8 928 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 SPATC1LQ9H0A9 340 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 IKZF4Q9H2S9 585 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 EPB41L4BQ9H329 900 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 KDM4CQ9H3R0 1056 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ACAD9Q9H845 621 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ERVK-5Q9HDB9 667 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 AGPAT3Q9NRZ7 376 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 RBPJLQ9UBG7 517 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ALG6Q9Y672 507 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 IGLV3-22A0A075B6J6 115 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ANKRD33BA6NCL7 494 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 PDHXO00330 501 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 PODXLO00592 558 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 BCRP11274 1271 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 MUTP22033 750 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 CHRNA3P32297 505 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ZNF131P52739 623 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 PLTPP55058 493 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 MYL7Q01449 175 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 TCEAL1Q15170 157 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 KCTD19Q17RG1 926 aaPredicted RBP14.21□□□□□ -0.13
VPS4A-204ENST00000566354 Q3C1V9 767 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 C11orf63Q6NUN7 778 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ADAT2Q7Z6V5 191 aaKnown RBP14.21□□□□□ -0.13
VPS4A-204ENST00000566354 CCDC50Q8IVM0 306 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 FAM178BQ8IXR5 827 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 UBL4BQ8N7F7 174 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 ALG3Q92685 438 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms