RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MIGA2Q7L4E1 593 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 FMNL3Q8IVF7 1028 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 FAM84AQ96KN4 292 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 TRIM7Q9C029 511 aa14.16□□□□□ -0.14
CLN3-210ENST00000563874 TDRD3Q9H7E2 651 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 ZNF219Q9P2Y4 722 aaPredicted RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 NOCTQ9UK39 431 aaKnown RBP14.16□□□□□ -0.14
CLN3-210ENST00000563874 AFF2P51816 1311 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 TP73O15350 636 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 POLR2MP0CAP2 368 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 MXI1P50539 228 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 PDE6CP51160 858 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 STAT2P52630 851 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 MYO1EQ12965 1108 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 C2CD6Q53TS8 623 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 SGO2Q562F6 1265 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 ACER1Q8TDN7 264 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 PRCCQ92733 491 aaPredicted RBP14.15□□□□□ -0.14
CLN3-210ENST00000563874 TMEM117Q9H0C3 514 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 STMN4Q9H169 189 aaPredicted RBP14.15□□□□□ -0.14
CLN3-210ENST00000563874 CHST7Q9NS84 486 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 PIK3CDO00329 1044 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 IPO5O00410 1097 aaKnown RBP14.15□□□□□ -0.14
CLN3-210ENST00000563874 RWDD2BP57060 319 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 FMO1Q01740 532 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 RASA3Q14644 834 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 RBM26Q5T8P6 1007 aaKnown RBP14.15□□□□□ -0.14
CLN3-210ENST00000563874 BTNL9Q6UXG8 535 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 DHX38Q92620 1227 aaKnown RBP14.15□□□□□ -0.14
CLN3-210ENST00000563874 HOMER3Q9NSC5 361 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 HSPBP1Q9NZL4 362 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 PNMA3Q9UL41 463 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 SUFUQ9UMX1 484 aa14.15□□□□□ -0.14
CLN3-210ENST00000563874 UBE4BO95155 1302 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 C21orf2O43822 256 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 GBP1P32455 592 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 GBP2P32456 591 aaPredicted RBP14.14□□□□□ -0.15
CLN3-210ENST00000563874 MPP2Q14168 576 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 TNFAIP8L3Q5GJ75 292 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 VSTM1Q6UX27 236 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 SLC9A9Q8IVB4 645 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 SEMA4DQ92854 862 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 THOC1Q96FV9 657 aaKnown RBP14.14□□□□□ -0.15
CLN3-210ENST00000563874 TMEM109Q9BVC6 243 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 CCDC134Q9H6E4 229 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 ECT2Q9H8V3 914 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 GPRC5CQ9NQ84 441 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 TRIM33Q9UPN9 1127 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 STK38LQ9Y2H1 464 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 USP15Q9Y4E8 981 aaPredicted RBP14.14□□□□□ -0.15
CLN3-210ENST00000563874 MYH11P35749 1972 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 A8MUI8 341 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 GSTA1P08263 222 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 RFX1P22670 979 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 CLNS1AP54105 237 aaKnown RBP14.14□□□□□ -0.15
CLN3-210ENST00000563874 NCALDP61601 193 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 CYP1B1Q16678 543 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 LLGL2Q6P1M3 1020 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 MAGEC3Q8TD91 643 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 SAAL1Q96ER3 474 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 RUNDC3BQ96NL0 473 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 HERPUD2Q9BSE4 406 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 STRA6Q9BX79 667 aa14.14□□□□□ -0.15
CLN3-210ENST00000563874 IGF2BP3O00425 579 aaKnown RBP eCLIP14.13□□□□□ -0.15
CLN3-210ENST00000563874 GGPS1O95749 300 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 ADRB2P07550 413 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 ADRA2BP18089 450 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 CYFIP1Q7L576 1253 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 CBWD2Q8IUF1 395 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 FAM71AQ8IYT1 594 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 XXYLT1Q8NBI6 393 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 LARSQ9P2J5 1176 aaKnown RBP14.13□□□□□ -0.15
CLN3-210ENST00000563874 ALDH5A1P51649 535 aaPredicted RBP14.13□□□□□ -0.15
CLN3-210ENST00000563874 MFSD5Q6N075 450 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 CYP4X1Q8N118 509 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 AGAP11Q8TF27 550 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 TEKT3Q9BXF9 490 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 TOPORSQ9NS56 1045 aaPredicted RBP14.13□□□□□ -0.15
CLN3-210ENST00000563874 SLC16A4O15374 487 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 CYP11B1P15538 503 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 CROCCP2Q86T23 111 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 PRUNE1Q86TP1 453 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 CSRNP1Q96S65 589 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 HEMGNQ9BXL5 484 aa14.13□□□□□ -0.15
CLN3-210ENST00000563874 TAF1LQ8IZX4 1826 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 BRAFP15056 766 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 NQO1P15559 274 aaKnown RBP14.12□□□□□ -0.15
CLN3-210ENST00000563874 ITGA8P53708 1063 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 TRMT10CQ7L0Y3 403 aaKnown RBP14.12□□□□□ -0.15
CLN3-210ENST00000563874 RPAINQ86UA6 219 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 NSMCE1Q8WV22 266 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 KIFC3Q9BVG8 833 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 IDI2Q9BXS1 227 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 WDR11Q9BZH6 1224 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 ATP6V0A4Q9HBG4 840 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 ANAPC7Q9UJX3 599 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 SIPA1L1O43166 1804 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 THAP12O43422 761 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 SUN1O94901 812 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms