RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 LRRC55Q6ZSA7 311 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 NELFCDQ8IXH7 590 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 TMEM192Q8IY95 271 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 SCFD1Q8WVM8 642 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 ERCC4Q92889 916 aaPredicted RBP17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 SMARCE1Q969G3 411 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 ZFP42Q96MM3 310 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 SAMD11Q96NU1 681 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 ACAP3Q96P50 834 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 RPS6KC1Q96S38 1066 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 MSTO1Q9BUK6 570 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 TBC1D13Q9NVG8 400 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 HCSTQ9UBK5 93 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 RWDD3Q9Y3V2 267 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 PCDHA5Q9Y5H7 936 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 STYXL1Q9Y6J8 313 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 A0A0B4J269 797 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 OGTO15294 1046 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 POMCP01189 267 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 CTNNB1P35222 781 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 BMPR1AP36894 532 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 SCNN1GP51170 649 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 SEZ6Q53EL9 994 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 KIAA0895Q8NCT3 520 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 POMGNT1Q8WZA1 660 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 CLP1Q92989 425 aaKnown RBP17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 FAM193BQ96PV7 902 aaPredicted RBP17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 GSDMAQ96QA5 445 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 GBP3Q9H0R5 595 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 CWH43Q9H720 699 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 AAASQ9NRG9 546 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 RMND1Q9NWS8 449 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 MIOSQ9NXC5 875 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 UBE4BO95155 1302 aa17.72■□□□□ 0.43
CHMP1A-209ENST00000550872 INPPL1O15357 1258 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 CLTAP09496 248 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 LAG3P18627 525 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 HOXD13P35453 343 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 GRIN2CQ14957 1233 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 KYAT1Q16773 422 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 EPC2Q52LR7 807 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 FBXO22Q8NEZ5 403 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 TOPORSQ9NS56 1045 aaPredicted RBP17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 AGO2Q9UKV8 859 aaKnown RBP17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 PCDHB12Q9Y5F1 795 aa17.71■□□□□ 0.43
CHMP1A-209ENST00000550872 ZMYM2Q9UBW7 1377 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 LINC00271P0C7V0 271 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 GARTP22102 1010 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 ADSSP30520 456 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 CAMK4Q16566 473 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 KNOP1Q1ED39 458 aaKnown RBP17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 BMT2Q1RMZ1 405 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 ARMCX5Q6P1M9 558 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 ZNF280BQ86YH2 543 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 COLGALT1Q8NBJ5 622 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 GSTCDQ8NEC7 633 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 SPATA20Q8TB22 786 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 ZNF558Q96NG5 402 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 GUCD1Q96NT3 240 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 PRDM12Q9H4Q4 367 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 NRDE2Q9H7Z3 1164 aa17.7■□□□□ 0.42
CHMP1A-209ENST00000550872 EPOPA6NHQ4 379 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 RFXAPO00287 272 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 TGFB1I1O43294 461 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 ZC3H11AO75152 810 aaKnown RBP eCLIP17.69■□□□□ 0.422e-6■■■■■ 37.4
CHMP1A-209ENST00000550872 DDHD2O94830 711 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 KIF20AO95235 890 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 RB1P06400 928 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 TNFSF9P41273 254 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 ALDH7A1P49419 539 aaKnown RBP17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 ACOT2P49753 483 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 GRIK3Q13003 919 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 ZBTB41Q5SVQ8 909 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 KCNT2Q6UVM3 1135 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 HS2ST1Q7LGA3 356 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 SNX27Q96L92 541 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 CBWD1Q9BRT8 395 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 PLVAPQ9BX97 442 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 CXCL16Q9H2A7 254 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 PCIF1Q9H4Z3 704 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 RPF1Q9H9Y2 349 aaKnown RBP17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 CDH23Q9H251 3354 aa17.69■□□□□ 0.42
CHMP1A-209ENST00000550872 TRIP11Q15643 1979 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 CITO14578 2027 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 PTGESO14684 152 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 FAM189A1O60320 539 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 LDHAP00338 332 aaKnown RBP17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 THP07101 528 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 CXCL8P10145 99 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 BCAR1P56945 870 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 GPM6BQ13491 265 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 SLC10A6Q3KNW5 377 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 GLRA4Q5JXX5 417 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 ISM2Q6H9L7 571 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 ALKAL1Q6UXT8 129 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 NLRC5Q86WI3 1866 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 NOC3LQ8WTT2 800 aaKnown RBP17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 SAAL1Q96ER3 474 aa17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 C11orf84Q9BUA3 381 aaPredicted RBP17.68■□□□□ 0.42
CHMP1A-209ENST00000550872 CLSTN2Q9H4D0 955 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms