RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RASA4O43374 803 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 VCLP18206 1134 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 CRABP2P29373 138 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 ADORA1P30542 326 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 LIFRP42702 1097 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 RPL5P46777 297 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 ASPHQ12797 758 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 SFT2D3Q587I9 215 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 CLEC4GQ6UXB4 293 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 COPS6Q7L5N1 327 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 RASGEF1CQ8N431 466 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 C10orf82Q8WW14 230 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 MRRFQ96E11 262 aaKnown RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 PRICKLE1Q96MT3 831 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 RUNDC3BQ96NL0 473 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 SERPINB12Q96P63 405 aa12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 GPC6Q9Y625 555 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-213ENST00000511496 IDH1O75874 414 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 CAMK2BQ13554 666 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 RRP1BQ14684 758 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 CCDC153Q494R4 210 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 C6orf163Q5TEZ5 329 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 PIP4K2CQ8TBX8 421 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 XAGE3Q8WTP9 111 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 CCT7Q99832 543 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 HEY2Q9UBP5 337 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 CLEC11AQ9Y240 323 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 ACEP12821 1306 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 BAZ2BQ9UIF8 2168 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 ERCC6L2Q5T890 1561 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 A0A1W2PQ67 120 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 H3BSA7 217 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 NDC80O14777 642 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 WDR46O15213 610 aaKnown RBP12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 CBFA2T3O75081 653 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 ZWINTO95229 277 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 TFAP2AP05549 437 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 LMNB2Q03252 620 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 TMED2Q15363 201 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 MYLK3Q32MK0 819 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 ANKDD1AQ495B1 522 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 LRRC6Q86X45 466 aa12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 POLR3CQ9BUI4 534 aaPredicted RBP12.8□□□□□ -0.36
LIMCH1-213ENST00000511496 MYOCOSA0A1B0GUC4 107 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 FAM187AA6NFU0 413 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 BTBD19C9JJ37 291 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 ANKRD63C9JTQ0 380 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 STRNO43815 780 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 SLC5A2P31639 672 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 KCNJ1P48048 391 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 ENTPD1P49961 510 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 KPNA1P52294 538 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 CHN2P52757 468 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 NCOA4Q13772 614 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 PRUNE1Q86TP1 453 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 NT5DC3Q86UY8 548 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 RNF169Q8NCN4 708 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 GFM2Q969S9 779 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 PRR11Q96HE9 360 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 MRPL1Q9BYD6 325 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 FBXO6Q9NRD1 293 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 KIAA1522Q9P206 1035 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 ZBTB21Q9ULJ3 1066 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 NAALADL1Q9UQQ1 740 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 COQ6Q9Y2Z9 468 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 MYO5BQ9ULV0 1848 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 ZBED4O75132 1171 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 S100A1P23297 94 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 AQP4P55087 323 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 SLC45A4Q5BKX6 768 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 C1orf146Q5VVC0 180 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 CCDC62Q6P9F0 684 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 PEX5LQ8IYB4 626 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 CCDC105Q8IYK2 499 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 SYT2Q8N9I0 419 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 DDX12PQ92771 950 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 GPR101Q96P66 508 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 SAR1AQ9NR31 198 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 TRNAU1APQ9NX07 287 aaKnown RBP12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 TELO2Q9Y4R8 837 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 SH3PXD2BA1X283 911 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 FAM47DPA6NHR8 397 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 CIB2O75838 187 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 NOL4O94818 638 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 UQCRBP14927 111 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 CALCOCO2Q13137 446 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 SEPT6Q14141 434 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 LRRC41Q15345 812 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 MDH1BQ5I0G3 518 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 IYDQ6PHW0 289 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 RIPOR1Q6ZS17 1223 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 ATG9AQ7Z3C6 839 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 METTL25Q8N6Q8 603 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 PPP4R1Q8TF05 950 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 JDP2Q8WYK2 163 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 PHF20Q9BVI0 1012 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 OSGEPQ9NPF4 335 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 NOX1Q9Y5S8 564 aa12.79□□□□□ -0.36
LIMCH1-213ENST00000511496 FOXD2O60548 495 aaPredicted RBP12.78□□□□□ -0.36
LIMCH1-213ENST00000511496 STIP1P31948 543 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms