RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 CAMK4Q16566 473 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 KNOP1Q1ED39 458 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 ZNF658Q5TYW1 1059 aaPredicted RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 ARMCX5Q6P1M9 558 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 HS2ST1Q7LGA3 356 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 CEP120Q8N960 986 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 GOLGA5Q8TBA6 731 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 FAM193BQ96PV7 902 aaPredicted RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 TGS1Q96RS0 853 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 GAD1Q99259 594 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 HAPLN2Q9GZV7 340 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 NUP62CLQ9H1M0 184 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 IKZF4Q9H2S9 585 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 CLSTN2Q9H4D0 955 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 ZNF576Q9H609 170 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 AAASQ9NRG9 546 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 TYW1Q9NV66 732 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 KLK14Q9P0G3 267 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 CGNQ9P2M7 1197 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 AGO2Q9UKV8 859 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 MRPL42Q9Y6G3 142 aaKnown RBP11.87□□□□□ -0.51
VPS13D-210ENST00000489961 KIAA1671Q9BY89 1806 aa11.87□□□□□ -0.51
VPS13D-210ENST00000489961 CARNS1A5YM72 827 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 TISP43B9A030 160 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 LDHAP00338 332 aaKnown RBP11.86□□□□□ -0.51
VPS13D-210ENST00000489961 POMCP01189 267 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 LAG3P18627 525 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 PTMSP20962 102 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 CTNNB1P35222 781 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 HOXD13P35453 343 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 FXR1P51114 621 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS13D-210ENST00000489961 ERVK-21P61565 698 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 HSP90AA2PQ14568 343 aaPredicted RBP11.86□□□□□ -0.51
VPS13D-210ENST00000489961 SEZ6Q53EL9 994 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 GUF1Q8N442 669 aaKnown RBP11.86□□□□□ -0.51
VPS13D-210ENST00000489961 GPT2Q8TD30 523 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 CLP1Q92989 425 aaKnown RBP11.86□□□□□ -0.51
VPS13D-210ENST00000489961 ZFP42Q96MM3 310 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 RPF1Q9H9Y2 349 aaKnown RBP11.86□□□□□ -0.51
VPS13D-210ENST00000489961 TBC1D13Q9NVG8 400 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 KIAA1468Q9P260 1216 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 MAN1B1Q9UKM7 699 aa11.86□□□□□ -0.51
VPS13D-210ENST00000489961 TRIP11Q15643 1979 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PDXKO00764 312 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 TGFB1I1O43294 461 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 CALUO43852 315 aaPredicted RBP11.85□□□□□ -0.51
VPS13D-210ENST00000489961 ARHGEF15O94989 841 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 THP07101 528 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 ADSSP30520 456 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PPP1R2P41236 205 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 ACOT2P49753 483 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 SCNN1GP51170 649 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 AFF1P51825 1210 aaKnown RBP11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PPP2R3AQ06190 1150 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 GRIK3Q13003 919 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 STIM1Q13586 685 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 LRRC55Q6ZSA7 311 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 TMEM192Q8IY95 271 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 TRIML1Q8N9V2 468 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 NOC3LQ8WTT2 800 aaKnown RBP11.85□□□□□ -0.51
VPS13D-210ENST00000489961 ARNTL2Q8WYA1 636 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 SNX27Q96L92 541 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 CBWD1Q9BRT8 395 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 C17orf80Q9BSJ5 609 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PCIF1Q9H4Z3 704 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 CWH43Q9H720 699 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PLEKHA5Q9HAU0 1116 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 AGPAT3Q9NRZ7 376 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 MIOSQ9NXC5 875 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 CPSF3Q9UKF6 684 aaKnown RBP11.85□□□□□ -0.51
VPS13D-210ENST00000489961 MAPK8IP1Q9UQF2 711 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PCDHB12Q9Y5F1 795 aa11.85□□□□□ -0.51
VPS13D-210ENST00000489961 PDCD11Q14690 1871 aaKnown RBP11.85□□□□□ -0.51
VPS13D-210ENST00000489961 BIN1O00499 593 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 EXTL3O43909 919 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 FAM189A1O60320 539 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 ZC3H11AO75152 810 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS13D-210ENST00000489961 RB1P06400 928 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 CXCL8P10145 99 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 BMPR1AP36894 532 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 TNFSF9P41273 254 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 ALDH7A1P49419 539 aaKnown RBP11.84□□□□□ -0.51
VPS13D-210ENST00000489961 POU5F1Q01860 360 aaKnown RBP11.84□□□□□ -0.51
VPS13D-210ENST00000489961 SLC10A6Q3KNW5 377 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 EPC2Q52LR7 807 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 COBLL1Q53SF7 1204 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 XKR4Q5GH76 650 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 ZBTB41Q5SVQ8 909 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 ISM2Q6H9L7 571 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 ALKAL1Q6UXT8 129 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 CD302Q8IX05 232 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 C12orf56Q8IXR9 622 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 SMYD4Q8IYR2 804 aaPredicted RBP11.84□□□□□ -0.51
VPS13D-210ENST00000489961 GPD1LQ8N335 351 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 COLGALT1Q8NBJ5 622 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 GSTCDQ8NEC7 633 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 FBXO22Q8NEZ5 403 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 SAAL1Q96ER3 474 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 ZNF558Q96NG5 402 aa11.84□□□□□ -0.51
VPS13D-210ENST00000489961 FAM213AQ9BRX8 229 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms