RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	EPM2AIP1	Q7L775	607 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	NT5DC3	Q86UY8	548 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ZC3H18	Q86VM9	953 aa	Known RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	THNSL1	Q8IYQ7	743 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	RSAD2	Q8WXG1	361 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ADAM22	Q9P0K1	906 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	SUGT1	Q9Y2Z0	365 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PKD1L3	Q7Z443	1732 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	RPA1	P27694	616 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	STRN3	Q13033	797 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	BRDT	Q58F21	947 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	FIGN	Q5HY92	759 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	IRF2BP2	Q7Z5L9	587 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	CFAP61	Q8NHU2	1237 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	LNX1	Q8TBB1	728 aa	Predicted RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	HSPH1	Q92598	858 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ITFG2	Q969R8	447 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	PPP1R36	Q96LQ0	422 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	SMC6	Q96SB8	1091 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	NAP1L4	Q99733	375 aa	Known RBP	11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	SLC13A1	Q9BZW2	595 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	RIOX1	Q9H6W3	641 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	NPHS2	Q9NP85	383 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	ETAA1	Q9NY74	926 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	TRPC6	Q9Y210	931 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	USH1C	Q9Y6N9	552 aa		11.42	□□□□□ -0.58
CHD3-208	ENST00000470531	RALA	P11233	206 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	DBN1	Q16643	649 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	ATP13A4	Q4VNC1	1196 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	LIN9	Q5TKA1	542 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	MAK16	Q9BXY0	300 aa	Known RBP	11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	STK33	Q9BYT3	514 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	HAO1	Q9UJM8	370 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531		H0YIN7	160 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	BANF1	O75531	89 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	GRAP2	O75791	330 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	MAPK7	Q13164	816 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	CEP55	Q53EZ4	464 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	IZUMO3	Q5VZ72	239 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	TATDN2	Q93075	761 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	TMEM143	Q96AN5	459 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	CCDC17	Q96LX7	622 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	ACCS	Q96QU6	501 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	PAGR1	Q9BTK6	254 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	KIF9	Q9HAQ2	790 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	CHST7	Q9NS84	486 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	RAB20	Q9NX57	234 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	HSPBP1	Q9NZL4	362 aa		11.41	□□□□□ -0.58
CHD3-208	ENST00000470531	FOS	P01100	380 aa	Predicted RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SLC8A1	P32418	973 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SHMT1	P34896	483 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	RHBDL3	P58872	404 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	EML3	Q32P44	896 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	FAXC	Q5TGI0	409 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	PHLDB3	Q6NSJ2	640 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SPATS2	Q86XZ4	545 aa	Known RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CERS5	Q8N5B7	392 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CHURC1	Q8WUH1	139 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	TMEM39B	Q9GZU3	492 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CDC42EP4	Q9H3Q1	356 aa	Known RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	TMEM165	Q9HC07	324 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	KAT6A	Q92794	2004 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CCDC78	A2IDD5	438 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	EYA4	O95677	639 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	PRELP	P51888	382 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	POLG	P54098	1239 aa	Predicted RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	RAD23B	P54727	409 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	DDR1	Q08345	913 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	ADCY2	Q08462	1091 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	MTMR1	Q13613	665 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	BYSL	Q13895	437 aa	Known RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	P3H1	Q32P28	736 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SWSAP1	Q6NVH7	229 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SYT2	Q8N9I0	419 aa	Predicted RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	DAGLB	Q8NCG7	672 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	DEPTOR	Q8TB45	409 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	TAS1R2	Q8TE23	839 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CNKSR1	Q969H4	720 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CFAP36	Q96G28	342 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	PABPC3	Q9H361	631 aa	Known RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SLITRK6	Q9H5Y7	841 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	ACTR5	Q9H9F9	607 aa	Predicted RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	PARP2	Q9UGN5	583 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	MRPL42	Q9Y6G3	142 aa	Known RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	BCL9L	Q86UU0	1499 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SPATA31A1	Q5TZJ5	1347 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SMIM24	O75264	130 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	ANP32D	O95626	131 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	ETS1	P14921	441 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	PRLR	P16471	622 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	RRM1	P23921	792 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	MAN1A1	P33908	653 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	GCLC	P48506	637 aa	Predicted RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	IL9R	Q01113	521 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	PPP4R3CP	Q6ZMV5	832 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	USP37	Q86T82	979 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SULF1	Q8IWU6	871 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	SPOCK2	Q92563	424 aa		11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	CCDC124	Q96CT7	223 aa	Known RBP	11.4	□□□□□ -0.58
CHD3-208	ENST00000470531	RNF19A	Q9NV58	838 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms