RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 ARHGEF19Q8IW93 802 aa9.66□□□□□ -0.86
COPB1-202ENST00000439561 TTC8Q8TAM2 541 aa9.66□□□□□ -0.86
COPB1-202ENST00000439561 KIFAP3Q92845 792 aa9.66□□□□□ -0.86
COPB1-202ENST00000439561 IQCGQ9H095 443 aaKnown RBP9.66□□□□□ -0.86
COPB1-202ENST00000439561 ZCWPW1Q9H0M4 648 aa9.66□□□□□ -0.86
COPB1-202ENST00000439561 SCOCQ9UIL1 159 aa9.66□□□□□ -0.86
COPB1-202ENST00000439561 PCDHA2Q9Y5H9 948 aa9.66□□□□□ -0.86
COPB1-202ENST00000439561 DCTN3O75935 186 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 TTC4O95801 387 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 VAMP7P51809 220 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 DLG4P78352 724 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 EAPPQ56P03 285 aaPredicted RBP9.65□□□□□ -0.86
COPB1-202ENST00000439561 SLC47A2Q86VL8 602 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 CKAP2Q8WWK9 683 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 SPIRE2Q8WWL2 714 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 SLC5A5Q92911 643 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 RBM15Q96T37 977 aaKnown RBP eCLIP9.65□□□□□ -0.86
COPB1-202ENST00000439561 TRABDQ9H4I3 376 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 ZMYND8Q9ULU4 1186 aaPredicted RBP9.65□□□□□ -0.86
COPB1-202ENST00000439561 USH1CQ9Y6N9 552 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 EML1O00423 815 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 GYG2O15488 501 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 RTN2O75298 545 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 EYA4O95677 639 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 ATP4AP20648 1035 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 CPA2P48052 419 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 GPSM2P81274 684 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 ICA1Q05084 483 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 MDH1BQ5I0G3 518 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 MIS18BP1Q6P0N0 1132 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 ANKMY2Q8IV38 441 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 CYP4X1Q8N118 509 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 LINC00116Q8NCU8 138 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 CFAP61Q8NHU2 1237 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 ZNF483Q8TF39 744 aaPredicted RBP9.65□□□□□ -0.86
COPB1-202ENST00000439561 L3MBTL3Q96JM7 780 aaPredicted RBP9.65□□□□□ -0.86
COPB1-202ENST00000439561 KIAA1683Q9H0B3 1180 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 EPB41L4BQ9H329 900 aa9.65□□□□□ -0.86
COPB1-202ENST00000439561 PAPOLBQ9NRJ5 636 aaKnown RBP9.65□□□□□ -0.86
COPB1-202ENST00000439561 NKX1-2Q9UD57 310 aaPredicted RBP9.65□□□□□ -0.86
COPB1-202ENST00000439561 NUP188Q5SRE5 1749 aa9.65□□□□□ -0.87
COPB1-202ENST00000439561 TIAM2Q8IVF5 1701 aa9.65□□□□□ -0.87
COPB1-202ENST00000439561 CICQ96RK0 1608 aaPredicted RBP9.65□□□□□ -0.87
COPB1-202ENST00000439561 CCDC160A6NGH7 325 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 FAM86B1E9PN63 330 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 MSH4O15457 936 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 TGFB1I1O43294 461 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 UNC5CO95185 931 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 FAM86B2P0C5J1 330 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 POTEJP0CG39 1038 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 RFC5P40937 340 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 PTGIRP43119 386 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 PPP4CP60510 307 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 DYNLT1P63172 113 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 CERKLQ49MI3 558 aaPredicted RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 TAF1BQ53T94 588 aaPredicted RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 RPS6KC1Q96S38 1066 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 ZC3H12CQ9C0D7 883 aaKnown RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 LARSQ9P2J5 1176 aaKnown RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 DPPA5A6NC42 116 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 O00370 1275 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 NVLO15381 856 aaKnown RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 ITIH2P19823 946 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 HOXD13P35453 343 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 MFAP3P55082 362 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 JAM2P57087 298 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 PPATQ06203 517 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 RCN1Q15293 331 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 P3H1Q32P28 736 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 C6orf163Q5TEZ5 329 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 PPP1R18Q6NYC8 613 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 CYFIP1Q7L576 1253 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 ZBED8Q8IZ13 594 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 AGGF1Q8N302 714 aaeCLIP9.64□□□□□ -0.87
COPB1-202ENST00000439561 MAB21L3Q8N8X9 362 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 CPA5Q8WXQ8 436 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 MAGEB18Q96M61 343 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 TMEM117Q9H0C3 514 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 RNPEPL1Q9HAU8 725 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 IRAK4Q9NWZ3 460 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 SLC5A4Q9NY91 659 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 NINJ2Q9NZG7 142 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 DAGLAQ9Y4D2 1042 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 TXNDC9O14530 226 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 KIF3CO14782 793 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 GGPS1O95749 300 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 UBTFL6P0CB48 400 aaPredicted RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 BMP3P12645 472 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 SKIP12755 728 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 SMARCA1P28370 1054 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 POU5F1Q01860 360 aaKnown RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 MKRN3Q13064 507 aaKnown RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 SYCP2LQ5T4T6 812 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 VSTM1Q6UX27 236 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 DHX38Q92620 1227 aaKnown RBP9.64□□□□□ -0.87
COPB1-202ENST00000439561 CFAP57Q96MR6 1250 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 CBWD1Q9BRT8 395 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 TRAIPQ9BWF2 469 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 STOML1Q9UBI4 398 aa9.64□□□□□ -0.87
COPB1-202ENST00000439561 GPR75-ASB3A0A0A6YYF3 556 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms