RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 CCDC94Q9BW85 323 aaPredicted RBP22.52■■□□□ 1.2
CHD3-204ENST00000439235 FTHL17Q9BXU8 183 aa22.52■■□□□ 1.2
CHD3-204ENST00000439235 OSBPL7Q9BZF2 842 aa22.52■■□□□ 1.2
CHD3-204ENST00000439235 WNT8AQ9H1J5 351 aa22.52■■□□□ 1.2
CHD3-204ENST00000439235 CPSF3Q9UKF6 684 aaKnown RBP22.52■■□□□ 1.2
CHD3-204ENST00000439235 NBNO60934 754 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 CYP2C18P33260 490 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 RAB27AP51159 221 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 VAMP7P51809 220 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 CCL23P55773 120 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 UBASH3AP57075 661 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 DSC3Q14574 896 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 SURF1Q15526 300 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 DCAF17Q5H9S7 520 aaPredicted RBP22.51■■□□□ 1.19
CHD3-204ENST00000439235 UBXN11Q5T124 520 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 TCERG1LQ5VWI1 586 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 CRELD2Q6UXH1 353 aaPredicted RBP22.51■■□□□ 1.19
CHD3-204ENST00000439235 HACE1Q8IYU2 909 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 TMC2Q8TDI7 906 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 EIF2AQ9BY44 585 aaKnown RBP22.51■■□□□ 1.19
CHD3-204ENST00000439235 TRIM5Q9C035 493 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 RPF1Q9H9Y2 349 aaKnown RBP22.51■■□□□ 1.19
CHD3-204ENST00000439235 IFNKQ9P0W0 207 aa22.51■■□□□ 1.19
CHD3-204ENST00000439235 STX10O60499 249 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 STAG3L1P0CL83 205 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 SKIP12755 728 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 PSMD6Q15008 389 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 SEZ6Q53EL9 994 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 ZBTB41Q5SVQ8 909 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 APTXQ7Z2E3 356 aaKnown RBP22.5■■□□□ 1.19
CHD3-204ENST00000439235 CEP120Q8N960 986 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 ANP32BQ92688 251 aaKnown RBP22.5■■□□□ 1.19
CHD3-204ENST00000439235 SCLYQ96I15 445 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 HTATIP2Q9BUP3 242 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 TRAIPQ9BWF2 469 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 VPS16Q9H269 839 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 TMX1Q9H3N1 280 aa22.5■■□□□ 1.19
CHD3-204ENST00000439235 A0A1B0GTH6 734 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 LGALS16A8MUM7 142 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 PES1O00541 588 aaKnown RBP22.49■■□□□ 1.19
CHD3-204ENST00000439235 TIMP1P01033 207 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 CXCL10P02778 98 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 RAG1P15918 1043 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 TNFSF9P41273 254 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 YARSP54577 528 aaKnown RBP22.49■■□□□ 1.19
CHD3-204ENST00000439235 OSTNP61366 133 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 VWA3BQ502W6 1294 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 PLEKHG4Q58EX7 1191 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 SLC35C1Q96A29 364 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 FNBP1Q96RU3 617 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 FAM105AQ9NUU6 356 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 PRKAG2Q9UGJ0 569 aa22.49■■□□□ 1.19
CHD3-204ENST00000439235 KIAA0100Q14667 2235 aaKnown RBP22.49■■□□□ 1.19
CHD3-204ENST00000439235 PDE4DIPQ5VU43 2346 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 TRIM43BA6NCK2 446 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 IL18RAPO95256 599 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 MCCD1P59942 119 aaPredicted RBP22.48■■□□□ 1.19
CHD3-204ENST00000439235 FKBP15Q5T1M5 1219 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 PARD3BQ8TEW8 1205 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 TRIM43Q96BQ3 446 aaPredicted RBP22.48■■□□□ 1.19
CHD3-204ENST00000439235 CCDC127Q96BQ5 260 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 ACAP3Q96P50 834 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 ADAM2Q99965 735 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 XPO4Q9C0E2 1151 aaKnown RBP22.48■■□□□ 1.19
CHD3-204ENST00000439235 NDST4Q9H3R1 872 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 TOPORSQ9NS56 1045 aaPredicted RBP22.48■■□□□ 1.19
CHD3-204ENST00000439235 C1orf112Q9NSG2 853 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 IPPQ9Y573 584 aa22.48■■□□□ 1.19
CHD3-204ENST00000439235 AP5Z1O43299 807 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 MGEA5O60502 916 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 AFPP02771 609 aaKnown RBP22.47■■□□□ 1.19
CHD3-204ENST00000439235 ZNF75DP51815 510 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 KCNH2Q12809 1159 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 GPNMBQ14956 572 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 ENOX2Q16206 610 aaKnown RBP22.47■■□□□ 1.19
CHD3-204ENST00000439235 MIIPQ5JXC2 388 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 CD302Q8IX05 232 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 TMEM199Q8N511 208 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 DBF4BQ8NFT6 615 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 NAP1L5Q96NT1 182 aaPredicted RBP22.47■■□□□ 1.19
CHD3-204ENST00000439235 CGRRF1Q99675 332 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 NXF3Q9H4D5 531 aaKnown RBP22.47■■□□□ 1.19
CHD3-204ENST00000439235 RTN4Q9NQC3 1192 aaKnown RBP22.47■■□□□ 1.19
CHD3-204ENST00000439235 PCDHB2Q9Y5E7 798 aa22.47■■□□□ 1.19
CHD3-204ENST00000439235 TULP1O00294 542 aaPredicted RBP22.46■■□□□ 1.19
CHD3-204ENST00000439235 N4BP1O75113 896 aaKnown RBP22.46■■□□□ 1.19
CHD3-204ENST00000439235 TRIM49P0CI25 452 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 TRIM49CP0CI26 452 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 CXCL8P10145 99 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 TMEM192Q8IY95 271 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 SMG8Q8ND04 991 aaKnown RBP22.46■■□□□ 1.19
CHD3-204ENST00000439235 PLEKHO2Q8TD55 490 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 MRFAP1L1Q96HT8 127 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 ASB7Q9H672 318 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 PLEKHA5Q9HAU0 1116 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 PDE11AQ9HCR9 933 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 RGS18Q9NS28 235 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 SNTG2Q9NY99 539 aa22.46■■□□□ 1.19
CHD3-204ENST00000439235 A0A0U1RQF3 1178 aa22.45■■□□□ 1.18
CHD3-204ENST00000439235 LRRIQ3A6PVS8 624 aaPredicted RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms