RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 NAIF1Q69YI7 327 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 MIGA2Q7L4E1 593 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 OR52N2Q8NGI0 321 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 CASKIN2Q8WXE0 1202 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 PUS7Q96PZ0 661 aaKnown RBP7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 CPPED1Q9BRF8 314 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 CSRNP2Q9H175 543 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 AURKAIP1Q9NWT8 199 aaPredicted RBP7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 SERPINB13Q9UIV8 391 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 LIMCH1Q9UPQ0 1083 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 CLCA2Q9UQC9 943 aa7.47□□□□□ -1.21
CCDC88A-206ENST00000430086 PJA2O43164 708 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 BUD31P41223 144 aaPredicted RBP7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 ODR4Q5SWX8 454 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 C1QL3Q5VWW1 255 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 PALM2Q8IXS6 379 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 MIER2Q8N344 545 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 ATXN2LQ8WWM7 1075 aaKnown RBP7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 CAMKK2Q96RR4 588 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 NUP88Q99567 741 aaPredicted RBP7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 SENP6Q9GZR1 1112 aaPredicted RBP7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 MOCS1Q9NZB8 636 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 HDAC5Q9UQL6 1122 aa7.46□□□□□ -1.22
CCDC88A-206ENST00000430086 KLRG2A4D1S0 409 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 CCDC154A6NI56 674 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 TBKBP1A7MCY6 615 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 AKAP10O43572 662 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 SGTAO43765 313 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 VCAM1P19320 739 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 MAN2A2P49641 1150 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 PTH1RQ03431 593 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 PIN1Q13526 163 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 BMT2Q1RMZ1 405 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 DRICH1Q6PGQ1 229 aaPredicted RBP7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 Q6ZRM9 215 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 MB21D1Q8N884 522 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 HSPBAP1Q96EW2 488 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 MNTQ99583 582 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 TMEM140Q9NV12 185 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 ANKRD6Q9Y2G4 727 aa7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 THRAP3Q9Y2W1 955 aaKnown RBP7.45□□□□□ -1.22
CCDC88A-206ENST00000430086 GOLGA6L6A8MZA4 724 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 PRR5-ARHGAP8B1AHC4 643 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 WNT10BO00744 389 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 S100BP04271 92 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 AMY1AP04745 511 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 RAB27AP51159 221 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 SCNN1GP51170 649 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 KRTAP10-2P60368 255 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 ATP8B2P98198 1209 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 RRP1BQ14684 758 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 VPS72Q15906 364 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 UAP1L1Q3KQV9 507 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 C3orf36Q3SXR2 165 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 SPDYAQ5MJ70 313 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 ANKS6Q68DC2 871 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 OTUD7BQ6GQQ9 843 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 XYLT1Q86Y38 959 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 RHOT1Q8IXI2 618 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 GPR20Q99678 358 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 GPR87Q9BY21 358 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 CPEB1Q9BZB8 566 aaKnown RBP7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 IP6K2Q9UHH9 426 aa7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 AJAP1Q9UKB5 411 aaPredicted RBP7.44□□□□□ -1.22
CCDC88A-206ENST00000430086 CXorf49A8MYA2 514 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 TEX33O43247 280 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 GPR32O75388 356 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 SNRPA1P09661 255 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 AKAP5P24588 427 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 CDC42EP1Q00587 391 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 MTM1Q13496 603 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 PPP4R3AQ6IN85 833 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 TMPRSS6Q8IU80 811 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 SLC35B2Q8TB61 432 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 CCHCR1Q8TD31 782 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 RHOBTB2Q9BYZ6 727 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 CDH19Q9H159 772 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 LDAHQ9H6V9 325 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 PCDHA13Q9Y5I0 950 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 CFAP20Q9Y6A4 193 aaKnown RBP7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 XDHP47989 1333 aa7.43□□□□□ -1.22
CCDC88A-206ENST00000430086 PLSCR1O15162 318 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 PPM1GO15355 546 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 IL33O95760 270 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 HK1P19367 917 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 PCSK1P29120 753 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 CLRN1P58418 232 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 CRHR2Q13324 411 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 IL10RAQ13651 578 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 CNGB1Q14028 1251 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 CSRP2Q16527 193 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 RRP12Q5JTH9 1297 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 AFMIDQ63HM1 303 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 ZGPATQ8N5A5 531 aaKnown RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 FBXO18Q8NFZ0 1043 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 STON2Q8WXE9 905 aa7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 RTFDC1Q9BY42 306 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 ZNF703Q9H7S9 590 aaPredicted RBP7.42□□□□□ -1.22
CCDC88A-206ENST00000430086 TDP1Q9NUW8 608 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms