RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ZC2HC1CQ53FD0 456 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 DYMQ7RTS9 669 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 APTXQ7Z2E3 356 aaKnown RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 FRMD5Q7Z6J6 570 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 IRF2BP1Q8IU81 584 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 COLGALT2Q8IYK4 626 aa7.67□□□□□ -1.18
LIMA1-202ENST00000394943 CCDC47Q96A33 483 aaKnown RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 MRPL9Q9BYD2 267 aaKnown RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 FAM49AQ9H0Q0 323 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 MTCL1Q9Y4B5 1905 aaKnown RBP7.67□□□□□ -1.18
LIMA1-202ENST00000394943 CALUO43852 315 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 RB1P06400 928 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 CASP1P29466 404 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 UBE3AQ05086 875 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 KCNA1Q09470 495 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 GRIK3Q13003 919 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 STRN3Q13033 797 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 NFKBIBQ15653 356 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 SLC10A6Q3KNW5 377 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 VTI1AQ96AJ9 217 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 NLRP4Q96MN2 994 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 RAD9AQ99638 391 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 LMAN2LQ9H0V9 348 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 GTPBP10A4D1E9 387 aaKnown RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 GOLGA6L4A6NEF3 574 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 LRRIQ4A6NIV6 560 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 LILRB3O75022 631 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 GNA14O95837 355 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 IQCB1Q15051 598 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 ENOX2Q16206 610 aaKnown RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 GPD1LQ8N335 351 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 PPP1R13LQ8WUF5 828 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 ADAM2Q99965 735 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 KIFC3Q9BVG8 833 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 PRKAG2Q9UGJ0 569 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 BICDL2A1A5D9 508 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 SFI1A8K8P3 1242 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 PIRO00625 290 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 TBC1D4O60343 1298 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 SRGAP2CP0DJJ0 459 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 RPL9P32969 192 aaKnown RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 AFMP43652 599 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 PPP2R3AQ06190 1150 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 CYP24A1Q07973 514 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 ARID5BQ14865 1188 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 SHHQ15465 462 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 SPATA1Q5VX52 437 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 CATSPER4Q7RTX7 472 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 WDR49Q8IV35 697 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 UBR7Q8N806 425 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 SYAP1Q96A49 352 aaPredicted RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 CCDC43Q96MW1 224 aaKnown RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 TARS2Q9BW92 718 aaKnown RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 MTIF3Q9H2K0 278 aaKnown RBP7.66□□□□□ -1.18
LIMA1-202ENST00000394943 MAFFQ9ULX9 164 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 GDAQ9Y2T3 454 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 IRAK3Q9Y616 596 aa7.66□□□□□ -1.18
LIMA1-202ENST00000394943 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 CYP11A1P05108 521 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 PMS1P54277 932 aaKnown RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 CCL23P55773 120 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 MRPL58Q14197 206 aaKnown RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 RAB30Q15771 203 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 PLEKHO2Q8TD55 490 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 OXCT2Q9BYC2 517 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 HSPBP1Q9NZL4 362 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 DACH1Q9UI36 760 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 M0QZQ0 153 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 ERLIN2O94905 339 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 GCNT3O95395 438 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 DEFB103AP81534 67 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 CACNB1Q02641 598 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 NCBP1Q09161 790 aaKnown RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 FOXD4L6Q3SYB3 417 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 C9orf50Q5SZB4 431 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 ANKRD40Q6AI12 368 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 FOXD4L3Q6VB84 417 aaPredicted RBP7.65□□□□□ -1.18
LIMA1-202ENST00000394943 CGRRF1Q99675 332 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 HERC2P3Q9BVR0 1158 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 PPP1R12CQ9BZL4 782 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 INSL6Q9Y581 213 aa7.65□□□□□ -1.18
LIMA1-202ENST00000394943 PRPF6O94906 941 aaKnown RBP7.65□□□□□ -1.19
LIMA1-202ENST00000394943 C4BPAP04003 597 aaKnown RBP7.65□□□□□ -1.19
LIMA1-202ENST00000394943 STX1AQ16623 288 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 RTL10Q7L3V2 364 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 TRIM59Q8IWR1 403 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 XXYLT1Q8NBI6 393 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 PANK2Q9BZ23 570 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 SLC39A2Q9NP94 309 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 GDAP2Q9NXN4 497 aa7.65□□□□□ -1.19
LIMA1-202ENST00000394943 CXXC1Q9P0U4 656 aaPredicted RBP7.65□□□□□ -1.19
LIMA1-202ENST00000394943 AGO2Q9UKV8 859 aaKnown RBP7.65□□□□□ -1.19
LIMA1-202ENST00000394943 MYCP01106 439 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 NR3C1P04150 777 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 ZSCAN20P17040 1043 aaPredicted RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 FKBP3Q00688 224 aaKnown RBP7.64□□□□□ -1.19
LIMA1-202ENST00000394943 KCNC3Q14003 757 aa7.64□□□□□ -1.19
LIMA1-202ENST00000394943 PDE12Q6L8Q7 609 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms