RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 DAPK3O43293 454 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 PLA2G6O60733 806 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 BTG3Q14201 252 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 MOXD1Q6UVY6 613 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 APOL5Q9BWW9 433 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 MTMR12Q9C0I1 747 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 RPTORQ8N122 1335 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 IGSF9BQ9UPX0 1349 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 EIF4BP23588 611 aaKnown RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 ACLYP53396 1101 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 TUBB2AQ13885 445 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 TCP11X2Q5H9J9 407 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 GJB7Q6PEY0 223 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 INTS8Q75QN2 995 aaKnown RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 SEPT8Q92599 483 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 BHMTQ93088 406 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 TMEM169Q96HH4 297 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 TUBB2BQ9BVA1 445 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 CHORDC1Q9UHD1 332 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 ODF2LQ9ULJ1 636 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 GOLGA4Q13439 2230 aaKnown RBP11.07□□□□□ -0.64
COL6A3-205ENST00000392004 MYH3P11055 1940 aa11.07□□□□□ -0.64
COL6A3-205ENST00000392004 LDHAP00338 332 aaKnown RBP11.06□□□□□ -0.64
COL6A3-205ENST00000392004 ITGB3P05106 788 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 RHOXF2BP0C7M4 288 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 SPATA31C1P0DKV0 1188 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 PDE6CP51160 858 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 LRRC63Q05C16 580 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 RBL2Q08999 1139 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 PPP2R5CQ13362 524 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 TOGARAM2Q6ZUX3 1019 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 TMC7Q7Z402 723 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 OR8K1Q8NGG5 319 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 ENOX1Q8TC92 643 aaKnown RBP11.06□□□□□ -0.64
COL6A3-205ENST00000392004 RHOXF2Q9BQY4 288 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 LRRC4Q9HBW1 653 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 FLRT1Q9NZU1 646 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 SEL1LQ9UBV2 794 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 DNAJC12Q9UKB3 198 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CTAGE9A4FU28 777 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 MYADML2A6NDP7 307 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CYP3A4P08684 503 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 PBX3P40426 434 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 TMEM132DQ14C87 1099 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 SLC17A8Q8NDX2 589 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 C7orf25Q9BPX7 421 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 IGFLR1Q9H665 355 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 MRPL42Q9Y6G3 142 aaKnown RBP11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CTAGE15A4D2H0 777 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 GPR182O15218 404 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 MYL1P05976 194 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CTAGE8P0CG41 777 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 POLR2BP30876 1174 aaKnown RBP11.06□□□□□ -0.64
COL6A3-205ENST00000392004 C2CD6Q53TS8 623 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CTAGE6Q86UF2 777 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CTAGE4Q8IX94 777 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 PGLYRP2Q96PD5 576 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 ALS2CR12Q96Q35 445 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 UBXN6Q9BZV1 441 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 AGPAT3Q9NRZ7 376 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 TUBBP07437 444 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 STAG3L1P0CL83 205 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 ZNF18P17022 549 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 RGS7P49802 495 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 APBA1Q02410 837 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 VWA3BQ502W6 1294 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 OR6B2Q6IFH4 312 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 SPOPLQ6IQ16 392 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 MMTAG2Q9BU76 263 aaKnown RBP11.06□□□□□ -0.64
COL6A3-205ENST00000392004 CDC23Q9UJX2 597 aa11.06□□□□□ -0.64
COL6A3-205ENST00000392004 PLIN4Q96Q06 1357 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 IGLV3-22A0A075B6J6 115 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 KIF4AO95239 1232 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 SLC9A1P19634 815 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 GLRA2P23416 452 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 KLK7P49862 253 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 PMS1P54277 932 aaKnown RBP11.05□□□□□ -0.64
COL6A3-205ENST00000392004 MFAP3P55082 362 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 GRB14Q14449 540 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 TAF2Q6P1X5 1199 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 MSANTD4Q8NCY6 345 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-205ENST00000392004 HSD17B14Q9BPX1 270 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 LCMT1Q9UIC8 334 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 ST3GAL5Q9UNP4 418 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 FAN1Q9Y2M0 1017 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 NRCAMQ92823 1304 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 H3BQF6 201 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 ASAP2O43150 1006 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 EEF1DP3Q658K8 133 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 ABHD15Q6UXT9 468 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 RDM1Q8NG50 284 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 SCFD1Q8WVM8 642 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 SEPT5Q99719 369 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-205ENST00000392004 WRAP73Q9P2S5 460 aaPredicted RBP11.05□□□□□ -0.64
COL6A3-205ENST00000392004 SHANK3Q9BYB0 1731 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 NSFP46459 744 aaKnown RBP11.05□□□□□ -0.64
COL6A3-205ENST00000392004 SLC26A2P50443 739 aa11.05□□□□□ -0.64
COL6A3-205ENST00000392004 NCOA4Q13772 614 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms