RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 FBXO40Q9UH90 709 aa11.21□□□□□ -0.61
RTN3-206ENST00000377819 DIS3Q9Y2L1 958 aaKnown RBP11.21□□□□□ -0.61
RTN3-206ENST00000377819 DIP2CQ9Y2E4 1556 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 MYL3P08590 195 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 CCDC130P13994 396 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 ZNF24P17028 368 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 GTF2E2P29084 291 aaKnown RBP11.21□□□□□ -0.62
RTN3-206ENST00000377819 STX3Q13277 289 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 NUP93Q8N1F7 819 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 FAM133AQ8N9E0 248 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 SHCBP1Q8NEM2 672 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 GOLPH3LQ9H4A5 285 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 PRDM5Q9NQX1 630 aaPredicted RBP11.21□□□□□ -0.62
RTN3-206ENST00000377819 EMILIN3Q9NT22 766 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 ZFATQ9P243 1243 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 ARL2BPQ9Y2Y0 163 aa11.21□□□□□ -0.62
RTN3-206ENST00000377819 NRXN1Q9ULB1 1477 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 E7EWF7 191 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 NDUFS3O75489 264 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 BMP3P12645 472 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 UBXN2AP68543 259 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZBED6P86452 979 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZNF568Q3ZCX4 644 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 KRT74Q7RTS7 529 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 CDKL3Q8IVW4 592 aaPredicted RBP11.2□□□□□ -0.62
RTN3-206ENST00000377819 C2orf69Q8N8R5 385 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZNF594Q96JF6 807 aaPredicted RBP11.2□□□□□ -0.62
RTN3-206ENST00000377819 PPP1R16BQ96T49 567 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 TM6SF1Q9BZW5 370 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 RAD21L1Q9H4I0 556 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 FANCEQ9HB96 536 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 SNX14Q9Y5W7 946 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 PPLO60437 1756 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 GCP02774 474 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 PRIM2P49643 509 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 RPS7P62081 194 aaKnown RBP11.2□□□□□ -0.62
RTN3-206ENST00000377819 NCF4Q15080 339 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZNF790Q6PG37 636 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 CCDC103Q8IW40 242 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 RBBP8Q99708 897 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 RGS18Q9NS28 235 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 NMRK1Q9NWW6 199 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ANAPC7Q9UJX3 599 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 CHMP2BQ9UQN3 213 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 C9orf84Q5VXU9 1444 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 SNPHO15079 494 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 AKAP10O43572 662 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 KRT20P35900 424 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 BTDP43251 543 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ALDH18A1P54886 795 aaKnown RBP11.2□□□□□ -0.62
RTN3-206ENST00000377819 CNTN1Q12860 1018 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 HIC1Q14526 733 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 DOK7Q18PE1 504 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZNF394Q53GI3 561 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 TRIM65Q6PJ69 517 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 SARM1Q6SZW1 724 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZNF614Q8N883 585 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 JADE3Q92613 823 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 EME1Q96AY2 570 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 TSPAN17Q96FV3 270 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 PRRG3Q9BZD7 231 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ETNK1Q9HBU6 452 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 UBAP1Q9NZ09 502 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.2□□□□□ -0.62
RTN3-206ENST00000377819 PTPRTO14522 1441 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 PIPSLA2A3N6 862 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 PSMD14O00487 310 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ZMYND10O75800 440 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 CYP19A1P11511 503 aaPredicted RBP11.2□□□□□ -0.62
RTN3-206ENST00000377819 CDK17Q00537 523 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 TEX2Q8IWB9 1127 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 GPKOWQ92917 476 aaPredicted RBP eCLIP11.2□□□□□ -0.623e-6■□□□□ 9.4
RTN3-206ENST00000377819 BCL2L14Q9BZR8 327 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 ANKRD36BQ8N2N9 1353 aa11.2□□□□□ -0.62
RTN3-206ENST00000377819 TRPM2O94759 1503 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 CENPXA8MT69 81 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 RNMTO43148 476 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 SERPING1P05155 500 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 PDAP1Q13442 181 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 WDR36Q8NI36 951 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 ZNF507Q8TCN5 953 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 FAM227BQ96M60 508 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 KIFC1Q9BW19 673 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 OSBPL1AQ9BXW6 950 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 MRPL1Q9BYD6 325 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 CNOT8Q9UFF9 292 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 HPS5Q9UPZ3 1129 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 SYNGAP1Q96PV0 1343 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 MYO1CO00159 1063 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 JAK2O60674 1132 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 HSD3B2P26439 372 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 MTHFSDQ2M296 383 aaKnown RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 KIZQ2M2Z5 673 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 NANOGNBQ7Z5D8 188 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 FAM160B2Q86V87 743 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 ATP11CQ8NB49 1132 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 ADI1Q9BV57 179 aa11.19□□□□□ -0.62
RTN3-206ENST00000377819 SPRTNQ9H040 489 aaPredicted RBP11.19□□□□□ -0.62
RTN3-206ENST00000377819 PNMA8BQ9ULN7 279 aaPredicted RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms