RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 STK32BQ9NY57 414 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 STRIP2Q9ULQ0 834 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 AKT3Q9Y243 479 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 VWDEQ8N2E2 1590 aa20.68■□□□□ 0.9
CCDC88B-202ENST00000356786 A0A1W2PQJ5 194 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 PLEKP08567 350 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 BRD2P25440 801 aaKnown RBP20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 BCAR1P56945 870 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 NCAPG2Q86XI2 1143 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 ACAP3Q96P50 834 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 PLAGL2Q9UPG8 496 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 PTPRUQ92729 1446 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 DIP2BQ9P265 1576 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 H3BRJ5 948 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 SRGAP2CP0DJJ0 459 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 P3H1Q32P28 736 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 SYDE1Q6ZW31 735 aaPredicted RBP20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 PMLP29590 882 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 GNA15P30679 374 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 NCLNQ969V3 563 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 STK33Q9BYT3 514 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 NRKQ7Z2Y5 1582 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 ATG9AQ7Z3C6 839 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 SIX6OS1Q8N1H7 587 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 C3orf20Q8ND61 904 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 UBE4BO95155 1302 aa20.67■□□□□ 0.9
CCDC88B-202ENST00000356786 SLC9A1P19634 815 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 SMARCA1P28370 1054 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 DNAJC3Q13217 504 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 CC2D2BQ6DHV5 1058 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 KIAA1586Q9HCI6 787 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 SEC24DO94855 1032 aaPredicted RBP20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 PSAPP07602 524 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 NQO1P15559 274 aaKnown RBP20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 VHLP40337 213 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 ERGIC2Q96RQ1 377 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 LACRTQ9GZZ8 138 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 BCS1LQ9Y276 419 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 KDM1AO60341 852 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 PDIA5Q14554 519 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 PACS2Q86VP3 889 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 CAPN6Q9Y6Q1 641 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 DENND3A2RUS2 1198 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 MYBL1P10243 752 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 POU5F1BQ06416 359 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 NEU2Q9Y3R4 380 aa20.66■□□□□ 0.9
CCDC88B-202ENST00000356786 PRAMEP78395 509 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 FOXD4Q12950 439 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 CYLC2Q14093 348 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 ALKBH8Q96BT7 664 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 RPF1Q9H9Y2 349 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 LCMT1Q9UIC8 334 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 MYMKA6NI61 221 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 F5H423 210 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 SASH3O75995 380 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 DAB2P98082 770 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 NAIF1Q69YI7 327 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 NBPF3Q9H094 633 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 ROR1Q01973 937 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 EZH2Q15910 746 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 KLF6Q99612 283 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 PABPC3Q9H361 631 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 PSMC3IPQ9P2W1 217 aaPredicted RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 FRMPD1Q5SYB0 1578 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 NMT1P30419 496 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 PAPD7Q5XG87 772 aaKnown RBP20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 DCAF15Q66K64 600 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 SLC30A5Q8TAD4 765 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 SENP2Q9HC62 589 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 ALG6Q9Y672 507 aa20.65■□□□□ 0.9
CCDC88B-202ENST00000356786 ZFXP17010 805 aaPredicted RBP20.64■□□□□ 0.9
CCDC88B-202ENST00000356786 HDAC4P56524 1084 aa20.64■□□□□ 0.9
CCDC88B-202ENST00000356786 FOXO4P98177 505 aa20.64■□□□□ 0.9
CCDC88B-202ENST00000356786 REREQ9P2R6 1566 aa20.64■□□□□ 0.9
CCDC88B-202ENST00000356786 ADCY3O60266 1144 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 TARSP26639 723 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 NEK2P51955 445 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 ARHGDIAP52565 204 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 RABL6Q3YEC7 729 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 LRRC8EQ6NSJ5 796 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 ELOA2Q8IYF1 753 aaPredicted RBP20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 MCPH1Q8NEM0 835 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 UVRAGQ9P2Y5 699 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 NPHP3-ACAD11A0A0J9YXS1 232 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 COPB2P35606 906 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 PPP1R18Q6NYC8 613 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 KLHL11Q9NVR0 708 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 APEX2Q9UBZ4 518 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 SPDYE2BA6NHP3 402 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 ORC4O43929 436 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 SPDYE6P0CI01 402 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 CPA2P48052 419 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 STX3Q13277 289 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 NBPF20Q3BBV1 942 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 CDC26Q8NHZ8 85 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 SCG3Q8WXD2 468 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 DDX56Q9NY93 547 aaKnown RBP20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 BFARQ9NZS9 450 aa20.64■□□□□ 0.89
CCDC88B-202ENST00000356786 SLC1A1P43005 524 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 DAB2IPQ5VWQ8 1189 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms