RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 MAGOHP61326 146 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 SATB1Q01826 763 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 RAPGEF1Q13905 1077 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 ZNF268Q14587 947 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 TNFAIP8L3Q5GJ75 292 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 MAMDC4Q6UXC1 1216 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 REXO1Q8N1G1 1221 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 UBLCP1Q8WVY7 318 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 ATXN2LQ8WWM7 1075 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 MAGOHBQ96A72 148 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 NAP1L3Q99457 506 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 PACSIN1Q9BY11 444 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 CRISPLD2Q9H0B8 497 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 NT5C3AQ9H0P0 336 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 KCNMB3Q9NPA1 279 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 NAGPAQ9UK23 515 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 GTPBP10A4D1E9 387 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 CCDC169A6NNP5 214 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 KRIT1O00522 736 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 LIN7AO14910 233 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 AGTP01019 485 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 PTENP60484 403 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 DHX34Q14147 1143 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 KRT71Q3SY84 523 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 ODF2Q5BJF6 829 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 DUPD1Q68J44 220 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 ZNF571Q7Z3V5 609 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 CCDC65Q8IXS2 484 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 ATP8B4Q8TF62 1192 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 FAXDC2Q96IV6 333 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 AMNQ9BXJ7 453 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 NSRP1Q9H0G5 558 aaKnown RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 STMN4Q9H169 189 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 NOD2Q9HC29 1040 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 BMP2KQ9NSY1 1161 aaPredicted RBP11.12□□□□□ -0.63
UPF3B-201ENST00000276201 ADAMTS1Q9UHI8 967 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 SYNGAP1Q96PV0 1343 aa11.12□□□□□ -0.63
UPF3B-201ENST00000276201 MCM3APO60318 1980 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PNMA6FA0A0J9YX94 578 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 OPLAHO14841 1288 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PPP1R12AO14974 1030 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 SNAI1O95863 264 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 CALRP27797 417 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 JAM2P57087 298 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 DHX9Q08211 1270 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 TCEAL1Q15170 157 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 LHX8Q68G74 356 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 RNF207Q6ZRF8 634 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 NT5DC3Q86UY8 548 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 VPS36Q86VN1 386 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 OR2W6PQ8NHA6 318 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 RSRC1Q96IZ7 334 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 CENPHQ9H3R5 247 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 ZDHHC18Q9NUE0 388 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PANK4Q9NVE7 773 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 FRMPD3Q5JV73 1810 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 DAPK3O43293 454 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 EDIL3O43854 480 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 H2AFZP0C0S5 128 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 ZNF131P52739 623 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 RPS6P62753 249 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 IRX1P78414 480 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PTK2Q05397 1052 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 C6orf118Q5T5N4 469 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 ALKBH5Q6P6C2 394 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 H2AFVQ71UI9 128 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PEX26Q7Z412 305 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 CCDC63Q8NA47 563 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 SNX29Q8TEQ0 813 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 FMO2Q99518 471 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PLCD4Q9BRC7 762 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 CARD9Q9H257 536 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 EPB41L4BQ9H329 900 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PABPC3Q9H361 631 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PACSIN2Q9UNF0 486 aaPredicted RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 TRAF3IP3Q9Y228 551 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 MRPL11Q9Y3B7 192 aaKnown RBP11.11□□□□□ -0.63
UPF3B-201ENST00000276201 PCDHA1Q9Y5I3 950 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 LRRC37A2A6NM11 1700 aa11.11□□□□□ -0.63
UPF3B-201ENST00000276201 CETN3O15182 167 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 OAS1P00973 400 aaKnown RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 ZNF865P0CJ78 1059 aaPredicted RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 CNGA1P29973 690 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 TXKP42681 527 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 CCNG1P51959 295 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 HADHBP55084 474 aaKnown RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 ADCY2Q08462 1091 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 ARMCX2Q7L311 632 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 DYMQ7RTS9 669 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 GBP7Q8N8V2 638 aaPredicted RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 SEC63Q9UGP8 760 aaKnown RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 SLC16A3O15427 465 aaKnown RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 FERP16591 822 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 FLT3P36888 993 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 CLNS1AP54105 237 aaKnown RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 KCNH2Q12809 1159 aa11.1□□□□□ -0.63
UPF3B-201ENST00000276201 MKRN4PQ13434 485 aaPredicted RBP11.1□□□□□ -0.63
UPF3B-201ENST00000276201 ZKSCAN8Q15776 578 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms