RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 SMARCAL1Q9NZC9 954 aa12.14□□□□□ -0.47
USP53-201ENST00000274030 EIF3EP60228 445 aaKnown RBP12.13□□□□□ -0.47
USP53-201ENST00000274030 GUCY1A3Q02108 690 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 STK4Q13043 487 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 ZC2HC1CQ53FD0 456 aaPredicted RBP12.13□□□□□ -0.47
USP53-201ENST00000274030 PLA2G4FQ68DD2 849 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 MAGEB5Q9BZ81 275 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 MYO1CO00159 1063 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 NFKBIAP25963 317 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 GNL1P36915 607 aaPredicted RBP12.13□□□□□ -0.47
USP53-201ENST00000274030 VSNL1P62760 191 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 ZNF543Q08ER8 600 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 FRMD5Q7Z6J6 570 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 DDIASQ8IXT1 998 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 IGDCC4Q8TDY8 1250 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 MTA3Q9BTC8 594 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 ETNK1Q9HBU6 452 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 RNF103-CHMP3A0A140T963 221 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 TMEM247A6NEH6 219 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 F8W8V4 182 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 HMBSP08397 361 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 MYBP10242 640 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 NNMTP40261 264 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 FASTKD5Q7L8L6 764 aaKnown RBP12.13□□□□□ -0.47
USP53-201ENST00000274030 USP33Q8TEY7 942 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 PGBD4Q96DM1 585 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 SUFUQ9UMX1 484 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 MRFAP1Q9Y605 127 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 CDC42BPGQ6DT37 1551 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 KCNN4O15554 427 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 MDH1BQ5I0G3 518 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 TRIM51Q9BSJ1 452 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 CCDC90BQ9GZT6 254 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 NOP53Q9NZM5 478 aaKnown RBP12.13□□□□□ -0.47
USP53-201ENST00000274030 ZNF609O15014 1411 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 GRIK1P39086 918 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 THEMIS2Q5TEJ8 643 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 ATP11CQ8NB49 1132 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 OR6J1Q8NGC5 347 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 ING2Q9H160 280 aa12.13□□□□□ -0.47
USP53-201ENST00000274030 CHORDC1Q9UHD1 332 aaPredicted RBP12.13□□□□□ -0.47
USP53-201ENST00000274030 CFAP74Q9C0B2 1584 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 DYNC1LI2O43237 492 aaPredicted RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 DNAJC6O75061 913 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 NLRP14Q86W24 1093 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 SLC35G2Q8TBE7 412 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 CEP19Q96LK0 163 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 SPATS2LQ9NUQ6 558 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 CNOT7Q9UIV1 285 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 PLA2R1Q13018 1463 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 A0A1W2PQC6 194 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 PDXKO00764 312 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 TNPO2O14787 897 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 ACTR2P61160 394 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 ORC2Q13416 577 aaPredicted RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 FAM167BQ9BTA0 163 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 PHF20Q9BVI0 1012 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 TRIM15Q9C019 465 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 AIPL1Q9NZN9 384 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 TAF6LQ9Y6J9 622 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 APRTP07741 180 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 VCPP55072 806 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 NR1H3Q13133 447 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 ZNF235Q14590 738 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 COG2Q14746 738 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 CDKL3Q8IVW4 592 aaPredicted RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 SH3KBP1Q96B97 665 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 NRBF2Q96F24 287 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 GJD4Q96KN9 370 aaPredicted RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 CASS4Q9NQ75 786 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 DDX56Q9NY93 547 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 E2F8A0AVK6 867 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 MYMKA6NI61 221 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 APOL1O14791 398 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 FXR1P51114 621 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP53-201ENST00000274030 GALCP54803 685 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 TADA2BQ86TJ2 420 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 SH2D3CQ8N5H7 860 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 C18orf8Q96DM3 657 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 ATP6V1G3Q96LB4 118 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 SCHIP1Q9P0W5 487 aaPredicted RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 GRID2IPA4D2P6 1211 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 HNRNPCL2B2RXH8 293 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 HNRNPCL1O60812 293 aaKnown RBP12.12□□□□□ -0.47
USP53-201ENST00000274030 MYBL1P10243 752 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 EFTUD2Q15029 972 aaKnown RBP eCLIP12.12□□□□□ -0.47
USP53-201ENST00000274030 CEP70Q8NHQ1 597 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 TMEM117Q9H0C3 514 aa12.12□□□□□ -0.47
USP53-201ENST00000274030 RTN2O75298 545 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 PDIA5Q14554 519 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 KCNB1Q14721 858 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 HIF1AQ16665 826 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 EPC2Q52LR7 807 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 MFSD14CQ5VZR4 134 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 MMS22LQ6ZRQ5 1243 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ENOSF1Q7L5Y1 443 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ST13P4Q8IZP2 240 aaPredicted RBP12.11□□□□□ -0.47
USP53-201ENST00000274030 KIF2CQ99661 725 aa12.11□□□□□ -0.47
USP53-201ENST00000274030 ZFATQ9P243 1243 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms