RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SYNGAP1Q96PV0 1343 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 BTAF1O14981 1849 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 SBF2Q86WG5 1849 aa15.35■□□□□ 0.05
SDC1-201ENST00000254351 A0A0A6YYK5 440 aaPredicted RBP15.34■□□□□ 0.05
SDC1-201ENST00000254351 BAG3O95817 575 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 SERPINB4P48594 390 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 FMO5P49326 533 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 MTFR1Q15390 333 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 MDH1BQ5I0G3 518 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ARHGEF18Q6ZSZ5 1173 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 INTS2Q9H0H0 1204 aaKnown RBP15.34■□□□□ 0.05
SDC1-201ENST00000254351 JMJD4Q9H9V9 463 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 PRKAG3Q9UGI9 489 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 USH1CQ9Y6N9 552 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 MYO3BQ8WXR4 1341 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 NVLO15381 856 aaKnown RBP15.34■□□□□ 0.05
SDC1-201ENST00000254351 AHCYL1O43865 530 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ATP9AO75110 1047 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ATP6V1C1P21283 382 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 RPL13P26373 211 aaKnown RBP15.34■□□□□ 0.05
SDC1-201ENST00000254351 UBXN2AP68543 259 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 SLC13A5Q86YT5 568 aaPredicted RBP15.34■□□□□ 0.05
SDC1-201ENST00000254351 KLHL11Q9NVR0 708 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 PARP2Q9UGN5 583 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 BRWD3Q6RI45 1802 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ANKRD62A6NC57 917 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 KCNA3P22001 575 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 HOXA13P31271 388 aaPredicted RBP15.34■□□□□ 0.05
SDC1-201ENST00000254351 GCLMP48507 274 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ITPK1Q13572 414 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ARHGAP27Q6ZUM4 889 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 SLC5A5Q92911 643 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 EPAS1Q99814 870 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 NUP85Q9BW27 656 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 ANAPC5Q9UJX4 755 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 PCDHA3Q9Y5H8 950 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 NUMBLQ9Y6R0 609 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 DOCK2Q92608 1830 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 PITPNM2Q9BZ72 1349 aa15.34■□□□□ 0.05
SDC1-201ENST00000254351 GOLGA8SH3BPF8 625 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 GOLGA8MH3BSY2 632 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 EXOC3O60645 756 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 AKR1B1P15121 316 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 CA4P22748 312 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 POLGP54098 1239 aaPredicted RBP15.33■□□□□ 0.05
SDC1-201ENST00000254351 IL9RQ01113 521 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 IKQ13123 557 aaPredicted RBP15.33■□□□□ 0.05
SDC1-201ENST00000254351 LRRC36Q1X8D7 754 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 SNX30Q5VWJ9 437 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 GSTA5Q7RTV2 222 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 SYCP3Q8IZU3 236 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 B4GALNT2Q8NHY0 566 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 OLIG1Q8TAK6 271 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 SCG3Q8WXD2 468 aaKnown RBP15.33■□□□□ 0.05
SDC1-201ENST00000254351 FGD4Q96M96 766 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 RUNDC3BQ96NL0 473 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 CYTH2Q99418 400 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 AGPAT1Q99943 283 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 STK33Q9BYT3 514 aa15.33■□□□□ 0.05
SDC1-201ENST00000254351 CAPN9O14815 690 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 TGFB1I1O43294 461 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 SGPL1O95470 568 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 TTC4O95801 387 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 T-ENOLP0DO92 83 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 CCNB1P14635 433 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 RPA3P35244 121 aaPredicted RBP15.33■□□□□ 0.04
SDC1-201ENST00000254351 STRN3Q13033 797 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 SHROOM1Q2M3G4 852 aaPredicted RBP15.33■□□□□ 0.04
SDC1-201ENST00000254351 PARP10Q53GL7 1025 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 FAM196AQ6ZSG2 479 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 PRR11Q96HE9 360 aaPredicted RBP15.33■□□□□ 0.04
SDC1-201ENST00000254351 DYDC2Q96IM9 177 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 NINJ2Q9NZG7 142 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 GRID1Q9ULK0 1009 aa15.33■□□□□ 0.04
SDC1-201ENST00000254351 O00370 1275 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 FAM13AO94988 1023 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 KPNB1Q14974 876 aaKnown RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 RASIP1Q5U651 963 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 FOXB2Q5VYV0 432 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 BTNL9Q6UXG8 535 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 ARHGEF19Q8IW93 802 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 SLC7A6OSQ96CW6 309 aaPredicted RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 MAGEB18Q96M61 343 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 HERPUD2Q9BSE4 406 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 GPR88Q9GZN0 384 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 SRP68Q9UHB9 627 aaKnown RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 ZFP69BQ9UJL9 534 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 R3HDM2Q9Y2K5 976 aaKnown RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 LRRC42Q9Y546 428 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 BANF1O75531 89 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 RTN3O95197 1032 aaPredicted RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 TTLL1O95922 423 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 NPEPPSP55786 919 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 MRPS35P82673 323 aaKnown RBP15.32■□□□□ 0.04
SDC1-201ENST00000254351 MYL7Q01449 175 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 ZSWIM2Q8NEG5 633 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 ZNF653Q96CK0 615 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 PCDHB18PQ96TA0 734 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 OCEL1Q9H607 264 aa15.32■□□□□ 0.04
SDC1-201ENST00000254351 TYW1Q9NV66 732 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms