RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 STK39Q9UEW8 545 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 G3BP2Q9UN86 482 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 LGALS16A8MUM7 142 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 DYRK3O43781 588 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 HIRAP54198 1017 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 POLE2P56282 527 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ACBD5Q5T8D3 534 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF557Q8N988 423 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 C8orf58Q8NAV2 365 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 MTERF3Q96E29 417 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 CHAMP1Q96JM3 812 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 PAPOLBQ9NRJ5 636 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 LIMA1Q9UHB6 759 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 RAD54BQ9Y620 910 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 RASA1P20936 1047 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 VPS41P49754 854 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SAMD3Q8N6K7 520 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 BEST2Q8NFU1 509 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 RFFLQ8WZ73 363 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ZSCAN32Q9NX65 697 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF229Q9UJW7 825 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 TMCO1Q9UM00 188 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ATXN2Q99700 1313 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 C5orf58C9J3I9 102 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 HUS1O60921 280 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 MTRF1O75570 445 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 KRT6BP04259 564 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ITIH2P19823 946 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 TECP42680 631 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 ACADSBP45954 432 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 KRT6CP48668 564 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 MYL6P60660 151 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 PTK6Q13882 451 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 SPDYCQ5MJ68 293 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 DCPSQ96C86 337 aaKnown RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 CD209Q9NNX6 404 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 KLHL8Q9P2G9 620 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-201ENST00000011700 CTNNAL1Q9UBT7 734 aa6.4□□□□□ -1.38
VPS13D-201ENST00000011700 FAM47DPA6NHR8 397 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 TAF4O00268 1085 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 FGGP02679 453 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 ETFBP38117 255 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 ABCA6Q8N139 1617 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 MMTAG2Q9BU76 263 aaKnown RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 SMIM31A0A1B0GVY4 71 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 O00370 1275 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 HAUS5O94927 633 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 GDF11O95390 407 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 IREB2P48200 963 aaKnown RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 MESDQ14696 234 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 FOXP4Q8IVH2 680 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 GUF1Q8N442 669 aaKnown RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 EME1Q96AY2 570 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 PLEKHA8Q96JA3 519 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 RUBCNLQ9H714 662 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 PALD1Q9ULE6 856 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 SPTBP11277 2137 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 EVPLLA8MZ36 301 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 YY1P25490 414 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 AP1S2P56377 157 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 ITGA9Q13797 1035 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 PARD3BQ8TEW8 1205 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 SEPT9Q9UHD8 586 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 HERC5Q9UII4 1024 aaKnown RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 ADGRA2Q96PE1 1338 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 MYO1CO00159 1063 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 CLDN3O15551 220 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 TRPA1O75762 1119 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 SDC4P31431 198 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 SLC10A4Q96EP9 437 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 ASB2Q96Q27 587 aa6.4□□□□□ -1.39
VPS13D-201ENST00000011700 CLEC4MQ9H2X3 399 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 H2AFY2Q9P0M6 372 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 PSMC3IPQ9P2W1 217 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 CCNL1Q9UK58 526 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-201ENST00000011700 A8MXQ7 604 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 MEFVO15553 781 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-201ENST00000011700 ELF1P32519 619 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 ITIH4Q14624 930 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 ZMYM1Q5SVZ6 1142 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 FBXL5Q9UKA1 691 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 LRFN2Q9ULH4 789 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 HPS5Q9UPZ3 1129 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 LMTK3Q96Q04 1460 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 TEX28O15482 410 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 MFAP3LO75121 409 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 OGNP20774 298 aaKnown RBP6.39□□□□□ -1.39
VPS13D-201ENST00000011700 HOXC9P31274 260 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 ITGADQ13349 1161 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 TRIM65Q6PJ69 517 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 RCOR2Q8IZ40 523 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 MAP3K14Q99558 947 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 PPARGC1AQ9UBK2 798 aaKnown RBP6.39□□□□□ -1.39
VPS13D-201ENST00000011700 SORCS3Q9UPU3 1222 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 PZPP20742 1482 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 WWP2O00308 870 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 BCAP31P51572 246 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 GNA13Q14344 377 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 PDIA5Q14554 519 aa6.39□□□□□ -1.39
VPS13D-201ENST00000011700 ADCK1Q86TW2 530 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms