RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 GAD1Q99259 594 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 ACO2Q99798 780 aaKnown RBP17.75■□□□□ 0.43
TRIM28-213ENST00000598355 ADPGKQ9BRR6 497 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 TMEM175Q9BSA9 504 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 DNAJB4Q9UDY4 337 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 TCF20Q9UGU0 1960 aaKnown RBP17.75■□□□□ 0.43
TRIM28-213ENST00000598355 MUC3AQ02505 3323 aa17.75■□□□□ 0.43
TRIM28-213ENST00000598355 SLC11A1P49279 550 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 DNM1Q05193 864 aaKnown RBP17.74■□□□□ 0.43
TRIM28-213ENST00000598355 HYAL1Q12794 435 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 RRAGBQ5VZM2 374 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 SHC4Q6S5L8 630 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 CCDC73Q6ZRK6 1079 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 COLGALT2Q8IYK4 626 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 BCL7CQ8WUZ0 217 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-213ENST00000598355 HLA-CQ95604 372 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 PABPC5Q96DU9 382 aaKnown RBP17.74■□□□□ 0.43
TRIM28-213ENST00000598355 MRPL4Q9BYD3 311 aaKnown RBP17.74■□□□□ 0.43
TRIM28-213ENST00000598355 CDT1Q9H211 546 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 UBE2ZQ9H832 354 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-213ENST00000598355 PARVGQ9HBI0 331 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 MIOSQ9NXC5 875 aa17.74■□□□□ 0.43
TRIM28-213ENST00000598355 VWA8A3KMH1 1905 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 H0YCG3 227 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 RECQL4O94761 1208 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 EFEMP2O95967 443 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 PIGRP01833 764 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 AKAP5P24588 427 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 ALDH7A1P49419 539 aaKnown RBP17.73■□□□□ 0.43
TRIM28-213ENST00000598355 SCNN1GP51170 649 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 SMTNP53814 917 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 RNASELQ05823 741 aaKnown RBP17.73■□□□□ 0.43
TRIM28-213ENST00000598355 GRIK3Q13003 919 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 ADGRD2Q7Z7M1 963 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 DNAJC19Q96DA6 116 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 IGSF21Q96ID5 467 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 TARS2Q9BW92 718 aaKnown RBP17.73■□□□□ 0.43
TRIM28-213ENST00000598355 ST6GALNAC4Q9H4F1 302 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 RCOR1Q9UKL0 485 aa17.73■□□□□ 0.43
TRIM28-213ENST00000598355 FRMD3A2A2Y4 597 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 MYMKA6NI61 221 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 PTGESO14684 152 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 NCK2O43639 380 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 POMCP01189 267 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 LIG1P18858 919 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 ERVFC1P60507 584 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 MRPS5P82675 430 aaKnown RBP17.72■□□□□ 0.43
TRIM28-213ENST00000598355 TFF2Q03403 129 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 BECN1Q14457 450 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 DHX8Q14562 1220 aaKnown RBP17.72■□□□□ 0.43
TRIM28-213ENST00000598355 SKIV2LQ15477 1246 aaKnown RBP17.72■□□□□ 0.43
TRIM28-213ENST00000598355 NAB2Q15742 525 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 ZPBP2Q6X784 338 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 HAUS6Q7Z4H7 955 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 RNF168Q8IYW5 571 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-213ENST00000598355 ASB2Q96Q27 587 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 APOL6Q9BWW8 343 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 VN1R3Q9BXE9 311 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 ZBP1Q9H171 429 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 MARCH5Q9NX47 278 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 SNTG2Q9NY99 539 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 CFAP45Q9UL16 551 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 PCDHGC5Q9Y5F6 944 aa17.72■□□□□ 0.43
TRIM28-213ENST00000598355 NT5C1B-RDH14C9J2C7 533 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 TRAK2O60296 914 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 TOM1L1O75674 476 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 PPP1R37O75864 691 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 FAM13AO94988 1023 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 GRM5P41594 1212 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 STAT6P42226 847 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 KRT17Q04695 432 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 ZNF568Q3ZCX4 644 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 XKR4Q5GH76 650 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 TJAP1Q5JTD0 557 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 MPZL3Q6UWV2 235 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 APBB1IPQ7Z5R6 666 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-213ENST00000598355 DDX53Q86TM3 631 aaKnown RBP17.71■□□□□ 0.43
TRIM28-213ENST00000598355 CEP120Q8N960 986 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 DDX12PQ92771 950 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 PPP2R3CQ969Q6 453 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 TMEM169Q96HH4 297 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 CUEDC2Q9H467 287 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 NGRNQ9NPE2 291 aaKnown RBP17.71■□□□□ 0.43
TRIM28-213ENST00000598355 SEL1LQ9UBV2 794 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 PUF60Q9UHX1 559 aaKnown RBP17.71■□□□□ 0.43
TRIM28-213ENST00000598355 PCDHA7Q9UN72 937 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 IRAK3Q9Y616 596 aa17.71■□□□□ 0.43
TRIM28-213ENST00000598355 NRP1O14786 923 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 TBCAO75347 108 aaKnown RBP17.7■□□□□ 0.42
TRIM28-213ENST00000598355 MCF2P10911 925 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 ABCD1P33897 745 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 LTBRP36941 435 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 GTF2BQ00403 316 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 STRN3Q13033 797 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 KCNC3Q14003 757 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 TMEM132AQ24JP5 1023 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 AAK1Q2M2I8 961 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 FOXD4L6Q3SYB3 417 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-213ENST00000598355 RESP18Q5W5W9 173 aa17.7■□□□□ 0.42
TRIM28-213ENST00000598355 FOXD4L3Q6VB84 417 aaPredicted RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms