RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SLC12A3P55017 1021 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 PEX3P56589 373 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 TMEM132AQ24JP5 1023 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 ZNF280BQ86YH2 543 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 SYT2Q8N9I0 419 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-205ENST00000595028 PRSS33Q8NF86 280 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 BCL7CQ8WUZ0 217 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-205ENST00000595028 CALML4Q96GE6 196 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 IGSF21Q96ID5 467 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 TMEM175Q9BSA9 504 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 TLE6Q9H808 572 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 NGRNQ9NPE2 291 aaKnown RBP16.65■□□□□ 0.26
TRIM28-205ENST00000595028 KCND2Q9NZV8 630 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 GIT1Q9Y2X7 761 aa16.65■□□□□ 0.26
TRIM28-205ENST00000595028 FSD2A1L4K1 749 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 C19orf67A6NJJ6 358 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 DDHD2O94830 711 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 SCNN1GP51170 649 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 DLX2Q07687 328 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-205ENST00000595028 ADAM15Q13444 863 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 DUSP6Q16828 381 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 RBM23Q86U06 439 aaKnown RBP16.64■□□□□ 0.25
TRIM28-205ENST00000595028 LRRC15Q8TF66 581 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 ZFP42Q96MM3 310 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 FAM193BQ96PV7 902 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-205ENST00000595028 CDCA3Q99618 268 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-205ENST00000595028 ZSCAN16Q9H4T2 348 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-205ENST00000595028 C17orf75Q9HAS0 396 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 ARHGAP28Q9P2N2 729 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 FBXO2Q9UK22 296 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-205ENST00000595028 USP20Q9Y2K6 914 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 TECTAO75443 2155 aa16.64■□□□□ 0.25
TRIM28-205ENST00000595028 MYO15AQ9UKN7 3530 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 CCDC169A6NNP5 214 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 HIDE1A8MVS5 230 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 GLP2RO95838 553 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 PLCG1P19174 1290 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 AKAP5P24588 427 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 MARCKSP29966 332 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-205ENST00000595028 NDUFV1P49821 464 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 DSC1Q08554 894 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 RAD51AP2Q09MP3 1159 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 SMC1AQ14683 1233 aaKnown RBP16.63■□□□□ 0.25
TRIM28-205ENST00000595028 KARSQ15046 597 aaKnown RBP16.63■□□□□ 0.25
TRIM28-205ENST00000595028 DCAF4L1Q3SXM0 396 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 NT5DC1Q5TFE4 455 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 EEF1DP3Q658K8 133 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 TMC7Q7Z402 723 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 DDX53Q86TM3 631 aaKnown RBP16.63■□□□□ 0.25
TRIM28-205ENST00000595028 RASSF8Q8NHQ8 419 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 USP28Q96RU2 1077 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 ADPGKQ9BRR6 497 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 ZBP1Q9H171 429 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 KMT5AQ9NQR1 393 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 BLOC1S4Q9NUP1 217 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 PRKAG3Q9UGI9 489 aa16.63■□□□□ 0.25
TRIM28-205ENST00000595028 MORC2Q9Y6X9 1032 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-205ENST00000595028 PER2O15055 1255 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 HSP90AA1P07900 732 aaKnown RBP16.62■□□□□ 0.25
TRIM28-205ENST00000595028 PLS3P13797 630 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 CEBPZQ03701 1054 aaKnown RBP16.62■□□□□ 0.25
TRIM28-205ENST00000595028 GRIK3Q13003 919 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 CLUL1Q15846 466 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 ATF7IP2Q5U623 682 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 TAS1R3Q7RTX0 852 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 GPBP1Q86WP2 473 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 ADHFE1Q8IWW8 467 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 COLGALT2Q8IYK4 626 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 GSTCDQ8NEC7 633 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 SPIRE2Q8WWL2 714 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 MSLNLQ96KJ4 702 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 VN1R3Q9BXE9 311 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 CCSER1Q9C0I3 900 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 TMEM134Q9H6X4 195 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 MARCH5Q9NX47 278 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 MIOSQ9NXC5 875 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 PARP2Q9UGN5 583 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 FAM50BQ9Y247 325 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 TRIP11Q15643 1979 aa16.62■□□□□ 0.25
TRIM28-205ENST00000595028 C2orf71A6NGG8 1288 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 SFI1A8K8P3 1242 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 K7ERI5 159 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 RECQL4O94761 1208 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 PTPN5P54829 565 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 SMAD4Q13485 552 aaKnown RBP16.61■□□□□ 0.25
TRIM28-205ENST00000595028 IER5LQ5T953 404 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 VPS52Q8N1B4 723 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 VN1R2Q8NFZ6 395 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 RAD54LQ92698 747 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 RPS6KC1Q96S38 1066 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 MRPL4Q9BYD3 311 aaKnown RBP16.61■□□□□ 0.25
TRIM28-205ENST00000595028 SNTG2Q9NY99 539 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 KLK14Q9P0G3 267 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 CLEC1BQ9P126 229 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 DAXXQ9UER7 740 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-205ENST00000595028 CD207Q9UJ71 328 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 BARX2Q9UMQ3 279 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-205ENST00000595028 TNFSF13BQ9Y275 285 aa16.61■□□□□ 0.25
TRIM28-205ENST00000595028 PRG3Q9Y2Y8 225 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-205ENST00000595028 RBM19Q9Y4C8 960 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms