RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 CRKP46108 304 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 IFNAR2P48551 515 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 PPP3CAQ08209 521 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 SYCP3Q8IZU3 236 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 CCHCR1Q8TD31 782 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 ZDHHC15Q96MV8 337 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 EBF2Q9HAK2 575 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 WHRNQ9P202 907 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 WRAP73Q9P2S5 460 aaPredicted RBP15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 AGAP1Q9UPQ3 857 aa15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 USP15Q9Y4E8 981 aaPredicted RBP15.95■□□□□ 0.14
SMARCA4-219ENST00000592604 TP73O15350 636 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 CHMP2AO43633 222 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 IKQ13123 557 aaPredicted RBP15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 FAM133BQ5BKY9 247 aaKnown RBP15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 MIGA2Q7L4E1 593 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 AAASQ9NRG9 546 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 NOCTQ9UK39 431 aaKnown RBP15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 PMM2O15305 246 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 CYP1A2P05177 515 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 ALADP13716 330 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 VAMP7P51809 220 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 CALCOCO2Q13137 446 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 TBC1D1Q86TI0 1168 aaPredicted RBP15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 C12orf56Q8IXR9 622 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 FAM71AQ8IYT1 594 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 DAW1Q8N136 415 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 EPS8L1Q8TE68 723 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 TCP11Q8WWU5 503 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 IDI2Q9BXS1 227 aa15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 CDC42EP4Q9H3Q1 356 aaKnown RBP15.94■□□□□ 0.14
SMARCA4-219ENST00000592604 UBOX5O94941 541 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 ECEL1O95672 775 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 KCNJ1P48048 391 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 NCALDP61601 193 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 CCDC38Q502W7 563 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 C1orf220Q5T0J3 134 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 ZNF746Q6NUN9 644 aaPredicted RBP15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 RHBDF2Q6PJF5 856 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 B3GNT9Q6UX72 402 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 SH3BP5LQ7L8J4 393 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 GBP7Q8N8V2 638 aaPredicted RBP15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 ARHGEF2Q92974 986 aaKnown RBP15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 MIEF2Q96C03 454 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 MRIQ9BWK5 157 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 CCDC113Q9H0I3 377 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 PTPN22Q9Y2R2 807 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 GAS7O60861 476 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 SGPL1O95470 568 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 CLTAP09496 248 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 NQO1P15559 274 aaKnown RBP15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 RWDD2BP57060 319 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 TCP10Q12799 353 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 BIRC2Q13490 618 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 VSTM1Q6UX27 236 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 ZNF564Q8TBZ8 553 aaPredicted RBP15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 FAM198AQ9UFP1 575 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 PRR12Q9ULL5 1215 aa15.93■□□□□ 0.14
SMARCA4-219ENST00000592604 CCDC189A1A4V9 331 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 FSCN2O14926 492 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 HIP1RO75146 1068 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 ATP5DP30049 168 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 SF3A3Q12874 501 aaKnown RBP eCLIP15.92■□□□□ 0.142e-6■■■■□ 25.8
SMARCA4-219ENST00000592604 RRP1BQ14684 758 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 ABCB5Q2M3G0 1257 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 NOP9Q86U38 636 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 PNMA8AQ86V59 439 aaPredicted RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 WDR11Q9BZH6 1224 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 TMEM206Q9H813 350 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 KCNQ5Q9NR82 932 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 CHORDC1Q9UHD1 332 aaPredicted RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 GTF3C4Q9UKN8 822 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 SPOPO43791 374 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 NPM3O75607 178 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 SUN1O94901 812 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 MAPTP10636 758 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 ITIH2P19823 946 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 SSR1P43307 286 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 MCCD1P59942 119 aaPredicted RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 BNIP1Q12981 228 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 TRAF1Q13077 416 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 CRYMQ14894 314 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 LONRF1Q17RB8 773 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 DOK7Q18PE1 504 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 RNF207Q6ZRF8 634 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 PSPC1Q8WXF1 523 aaKnown RBP15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 NUP85Q9BW27 656 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 UVRAGQ9P2Y5 699 aa15.92■□□□□ 0.14
SMARCA4-219ENST00000592604 TMEM120BA0PK00 339 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 MAPK13O15264 365 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 GCLMP48507 274 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 CACNB3P54284 484 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 ALCAMQ13740 583 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 CCDC25Q86WR0 208 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 CPNE8Q86YQ8 564 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 DYDC1Q8WWB3 177 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 CKAP2Q8WWK9 683 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 DDX23Q9BUQ8 820 aaKnown RBP15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 UNC45AQ9H3U1 944 aa15.91■□□□□ 0.14
SMARCA4-219ENST00000592604 FGFR1OP2Q9NVK5 253 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms