RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 C15orf39Q6ZRI6 1047 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 CCDC83Q8IWF9 413 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 ZBTB8OSQ8IWT0 167 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 ZSCAN31Q96LW9 406 aaPredicted RBP20.74■□□□□ 0.91
CLN3-218ENST00000565688 C2orf40Q9H1Z8 148 aa20.74■□□□□ 0.91
CLN3-218ENST00000565688 A0A087WWV3 80 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 C2CD2LO14523 706 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 MED24O75448 989 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 NPTXRO95502 500 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 EFEMP2O95967 443 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 MUTP22033 750 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 MRE11P49959 708 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 FAM187BQ17R55 369 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 CDCA2Q69YH5 1023 aaPredicted RBP20.73■□□□□ 0.91
CLN3-218ENST00000565688 CCDC149Q6ZUS6 474 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 MAEAQ7L5Y9 396 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 OTOP3Q7RTS5 596 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 RNF168Q8IYW5 571 aaPredicted RBP20.73■□□□□ 0.91
CLN3-218ENST00000565688 FBXO18Q8NFZ0 1043 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 ACSF2Q96CM8 615 aaPredicted RBP20.73■□□□□ 0.91
CLN3-218ENST00000565688 GPRC5CQ9NQ84 441 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 MIOSQ9NXC5 875 aa20.73■□□□□ 0.91
CLN3-218ENST00000565688 DAXXQ9UER7 740 aaPredicted RBP20.73■□□□□ 0.91
CLN3-218ENST00000565688 C1RP00736 705 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 AKAP5P24588 427 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 TRAPPC10P48553 1259 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 DSG1Q02413 1049 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 GRIK3Q13003 919 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 GNL2Q13823 731 aaKnown RBP20.72■□□□□ 0.91
CLN3-218ENST00000565688 ZNF174Q15697 407 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 IER5LQ5T953 404 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 KIAA0319Q5VV43 1072 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 POTEGQ6S5H5 508 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 CYP26C1Q6V0L0 522 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 TAS1R1Q7RTX1 841 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 GPR65Q8IYL9 337 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 PRSS33Q8NF86 280 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 CMASQ8NFW8 434 aaPredicted RBP20.72■□□□□ 0.91
CLN3-218ENST00000565688 FZD8Q9H461 694 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 RXFP1Q9HBX9 757 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 SH2B1Q9NRF2 756 aaPredicted RBP20.72■□□□□ 0.91
CLN3-218ENST00000565688 LIMD1Q9UGP4 676 aa20.72■□□□□ 0.91
CLN3-218ENST00000565688 ARHGEF35A5YM69 484 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 TEX28O15482 410 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 BRD1O95696 1058 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 GLUD1P00367 558 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 CYP11B2P19099 503 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 TTC38Q5R3I4 469 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 HAUS3Q68CZ6 603 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 PADI6Q6TGC4 694 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 CDR2LQ86X02 465 aaPredicted RBP20.71■□□□□ 0.91
CLN3-218ENST00000565688 NOSTRINQ8IVI9 506 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 FAM184AQ8NB25 1140 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 GSTCDQ8NEC7 633 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 RHOBTB2Q9BYZ6 727 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 MAN1C1Q9NR34 630 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.71■□□□□ 0.91
CLN3-218ENST00000565688 CHST7Q9NS84 486 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 PARP2Q9UGN5 583 aa20.71■□□□□ 0.91
CLN3-218ENST00000565688 NOL7Q9UMY1 257 aaKnown RBP20.71■□□□□ 0.91
CLN3-218ENST00000565688 N4BP3O15049 544 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 AVPR2P30518 371 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 NUBP1P53384 320 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 CREMQ03060 361 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 PPP2R5AQ15172 486 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 MAPK6Q16659 721 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 USP41Q3LFD5 358 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 HDAC7Q8WUI4 952 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 IRF2BPLQ9H1B7 796 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 ADAM28Q9UKQ2 775 aa20.7■□□□□ 0.9
CLN3-218ENST00000565688 TDRD15B5MCY1 1934 aaKnown RBP20.7■□□□□ 0.9
CLN3-218ENST00000565688 ASGR2P07307 311 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 NAMPTP43490 491 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 VCPP55072 806 aaKnown RBP20.69■□□□□ 0.9
CLN3-218ENST00000565688 PRPF4BQ13523 1007 aaKnown RBP20.69■□□□□ 0.9
CLN3-218ENST00000565688 TMEM132AQ24JP5 1023 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 FUT10Q6P4F1 479 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 ADPGKQ9BRR6 497 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 KLK14Q9P0G3 267 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 STK24Q9Y6E0 443 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 DENND4AQ7Z401 1863 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 KMT2EQ8IZD2 1858 aa20.69■□□□□ 0.9
CLN3-218ENST00000565688 F8W810 466 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 ACKR2O00590 384 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 FXR2P51116 673 aaKnown RBP eCLIP20.68■□□□□ 0.9
CLN3-218ENST00000565688 TUSC3Q13454 348 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 DEPTORQ8TB45 409 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 GPR62Q9BZJ7 368 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 PLEKHA4Q9H4M7 779 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 PDZD7Q9H5P4 517 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 FNIP2Q9P278 1114 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 MYO10Q9HD67 2058 aa20.68■□□□□ 0.9
CLN3-218ENST00000565688 CCDC195A0A1B0GUA6 201 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 TADA2AO75478 443 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 PRKCBP05771 671 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 CCT6AP40227 531 aaKnown RBP20.67■□□□□ 0.9
CLN3-218ENST00000565688 EFNA5P52803 228 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 TCF15Q12870 199 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 PDIA5Q14554 519 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 HSP90AA2PQ14568 343 aaPredicted RBP20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms