RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RFPL2O75678 378 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 GLUD1P00367 558 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 RARRES1P49788 294 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 DSG1Q02413 1049 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 POU5F1BQ06416 359 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 ANKRD1Q15327 319 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 MAEAQ7L5Y9 396 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 PALB2Q86YC2 1186 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 GSTCDQ8NEC7 633 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 GTF3C6Q969F1 213 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 CCDC43Q96MW1 224 aaKnown RBP18.73■□□□□ 0.59
CLN3-211ENST00000564091 COLEC11Q9BWP8 271 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 GPR62Q9BZJ7 368 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 POLR3FQ9H1D9 316 aaPredicted RBP18.73■□□□□ 0.59
CLN3-211ENST00000564091 GPRC5CQ9NQ84 441 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 KLK14Q9P0G3 267 aa18.73■□□□□ 0.59
CLN3-211ENST00000564091 NEMFO60524 1076 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 JAK2O60674 1132 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 USO1O60763 962 aaKnown RBP18.72■□□□□ 0.59
CLN3-211ENST00000564091 NR1I2O75469 434 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 NPTXRO95502 500 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 CLCN5P51795 746 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 ANAPC15P60006 121 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 CWF19L1Q69YN2 538 aaKnown RBP18.72■□□□□ 0.59
CLN3-211ENST00000564091 DIS3L2Q8IYB7 885 aaKnown RBP18.72■□□□□ 0.59
CLN3-211ENST00000564091 RSAD2Q8WXG1 361 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 MTMR9Q96QG7 549 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 WDR6Q9NNW5 1121 aaKnown RBP18.72■□□□□ 0.59
CLN3-211ENST00000564091 CHST7Q9NS84 486 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 PARP2Q9UGN5 583 aa18.72■□□□□ 0.59
CLN3-211ENST00000564091 PI15O43692 258 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 NARSO43776 548 aaKnown RBP18.71■□□□□ 0.59
CLN3-211ENST00000564091 NPR3P17342 541 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 GBP2P32456 591 aaPredicted RBP18.71■□□□□ 0.59
CLN3-211ENST00000564091 FUT10Q6P4F1 479 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 GLYCTKQ8IVS8 523 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 HACE1Q8IYU2 909 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 NSUN7Q8NE18 718 aaKnown RBP18.71■□□□□ 0.59
CLN3-211ENST00000564091 ZNF707Q96C28 371 aaPredicted RBP18.71■□□□□ 0.59
CLN3-211ENST00000564091 NFKBIZQ9BYH8 718 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 TMEM60Q9H2L4 133 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 CACNG4Q9UBN1 327 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 FBXL21Q9UKT6 434 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 DUSP12Q9UNI6 340 aa18.71■□□□□ 0.59
CLN3-211ENST00000564091 A0A1B0GUA9 196 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 POTEMA6NI47 508 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 LRRIQ4A6NIV6 560 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 RPL17P18621 184 aaKnown RBP18.7■□□□□ 0.58
CLN3-211ENST00000564091 ATP2B1P20020 1258 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 SLC27A1Q6PCB7 646 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 ASCL5Q7RTU5 278 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 SIX5Q8N196 739 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 RIN2Q8WYP3 895 aaPredicted RBP18.7■□□□□ 0.58
CLN3-211ENST00000564091 SMG7Q92540 1137 aaKnown RBP18.7■□□□□ 0.58
CLN3-211ENST00000564091 MYADMQ96S97 322 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 IGSF9Q9P2J2 1179 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 WDR81Q562E7 1941 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 VPS13AQ96RL7 3174 aa18.7■□□□□ 0.58
CLN3-211ENST00000564091 PROB1E7EW31 1015 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 TGM5O43548 720 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 SPATA31C1P0DKV0 1188 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 USP41Q3LFD5 358 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 ELMSAN1Q6PJG2 1045 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 PAAF1Q9BRP4 392 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 DPP7Q9UHL4 492 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 RIF1Q5UIP0 2472 aaKnown RBP18.69■□□□□ 0.58
CLN3-211ENST00000564091 CLUHO75153 1309 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 MYO10Q9HD67 2058 aa18.69■□□□□ 0.58
CLN3-211ENST00000564091 TTLL13PA6NNM8 815 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 TADA2AO75478 443 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 CFHP08603 1231 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 XRCC6P12956 609 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLN3-211ENST00000564091 AOC1P19801 751 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 GRIK3Q13003 919 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 TRIM29Q14134 588 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 CYP26C1Q6V0L0 522 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 CATSPER3Q86XQ3 398 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 STAMQ92783 540 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 RHOBTB2Q9BYZ6 727 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 NT5C3AQ9H0P0 336 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 PIDD1Q9HB75 910 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 ADAM28Q9UKQ2 775 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 USP20Q9Y2K6 914 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 KMT2EQ8IZD2 1858 aa18.68■□□□□ 0.58
CLN3-211ENST00000564091 MED24O75448 989 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 MCM7P33993 719 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 NBL1P41271 181 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 GUCY1B3Q02153 619 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 ST3GAL1Q11201 340 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 RTP2Q5QGT7 225 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 LILRA6Q6PI73 481 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 POTEGQ6S5H5 508 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 PRSS55Q6UWB4 352 aaPredicted RBP18.67■□□□□ 0.58
CLN3-211ENST00000564091 FRMD5Q7Z6J6 570 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 ST13P5Q8NFI4 369 aaPredicted RBP18.67■□□□□ 0.58
CLN3-211ENST00000564091 HASPINQ8TF76 798 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 HDAC7Q8WUI4 952 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 CXCL16Q9H2A7 254 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 FZD8Q9H461 694 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 PLEKHA4Q9H4M7 779 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms