RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 DALRD3Q5D0E6 543 aaKnown RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 ARSIQ5FYB1 569 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 FAM102BQ5T8I3 360 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 KRT39Q6A163 491 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 PHLDB3Q6NSJ2 640 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 ENOSF1Q7L5Y1 443 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 TSEN2Q8NCE0 465 aaKnown RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 OLIG1Q8TAK6 271 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 TMC2Q8TDI7 906 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 ADAMTS19Q8TE59 1207 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 C12orf42Q96LP6 360 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 TAAR1Q96RJ0 339 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 MOV10L1Q9BXT6 1211 aaKnown RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 TMEM8AQ9HCN3 771 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 HOMER2Q9NSB8 354 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 RNF146Q9NTX7 359 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 HCSTQ9UBK5 93 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 RASAL2Q9UJF2 1139 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 TBX20Q9UMR3 447 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 PCDHA10Q9Y5I2 948 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 NFASCO94856 1347 aa7.84□□□□□ -1.15
VPS13C-206ENST00000558338 BRCA1P38398 1863 aaKnown RBP7.84□□□□□ -1.15
VPS13C-206ENST00000558338 LOC285556D6RIA3 1793 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 FOXN3O00409 490 aaPredicted RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 VWA5AO00534 786 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 KIAA0391O15091 583 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ZC3H11AO75152 810 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 LRRN2O75325 713 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PSAPP07602 524 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ABCB4P21439 1286 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 GCLMP48507 274 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 GPC3P51654 580 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 BACE1P56817 501 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 GPC5P78333 572 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 MTMR2Q13614 643 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 GNPTABQ3T906 1256 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 MAEAQ7L5Y9 396 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 APOBEC3FQ8IUX4 373 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 MICALL2Q8IY33 904 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 EFCAB13Q8IY85 973 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 SCYL3Q8IZE3 742 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 IQCKQ8N0W5 287 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ARFGAP2Q8N6H7 521 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RDH13Q8NBN7 331 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 GIPC2Q8TF65 315 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RIN2Q8WYP3 895 aaPredicted RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 SEC14L1Q92503 715 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 NT5C1BQ96P26 610 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RPS6KC1Q96S38 1066 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 CBWD1Q9BRT8 395 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 CAPS2Q9BXY5 557 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 IKZF4Q9H2S9 585 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PCIF1Q9H4Z3 704 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 KIAA1586Q9HCI6 787 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 KMT5AQ9NQR1 393 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PICK1Q9NRD5 415 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 COQ4Q9Y3A0 265 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ESYT3A0FGR9 886 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 CCDC169A6NNP5 214 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 C19orf81C9J6K1 198 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 SLC16A4O15374 487 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 DDX3YO15523 660 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 DGAT1O75907 488 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 FGGP02679 453 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 GARTP22102 1010 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PDE6CP51160 858 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RNASE9P60153 205 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PTENP60484 403 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ERVK-9P63128 1117 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PPP3CAQ08209 521 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 SNRNP35Q16560 246 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 UGCGQ16739 394 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 SEL1L2Q5TEA6 688 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 EMC10Q5UCC4 262 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 LRRC31Q6UY01 552 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 NSMFQ6X4W1 530 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 KDM7AQ6ZMT4 941 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RUFY4Q6ZNE9 571 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 VSIG10LQ86VR7 867 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ARHGEF19Q8IW93 802 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 FAM71AQ8IYT1 594 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RPUSD2Q8IZ73 545 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF280CQ8ND82 737 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 TMEM161BQ8NDZ6 487 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 NSUN6Q8TEA1 469 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 SHC3Q92529 594 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 IFT74Q96LB3 600 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 RNPC3Q96LT9 517 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 NTPCRQ9BSD7 190 aaKnown RBP7.83□□□□□ -1.16
VPS13C-206ENST00000558338 PLVAPQ9BX97 442 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 TMEM117Q9H0C3 514 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 THAP2Q9H0W7 228 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 WNT8AQ9H1J5 351 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 OSGEPQ9NPF4 335 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 CTTNBP2NLQ9P2B4 639 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 UVRAGQ9P2Y5 699 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 MYPNQ86TC9 1320 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 LTBP3Q9NS15 1303 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 IGSF9BQ9UPX0 1349 aa7.83□□□□□ -1.16
VPS13C-206ENST00000558338 DENND3A2RUS2 1198 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms