RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CARD9Q9H257 536 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 KDM4CQ9H3R0 1056 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 CNOT10Q9H9A5 744 aaKnown RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 ZMYND8Q9ULU4 1186 aaPredicted RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 G3V3G9 751 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 K7ENM7 598 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 PHF2O75151 1096 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 SLITRK3O94933 977 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 BRAFP15056 766 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 CCNHP51946 323 aaPredicted RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 SOX10P56693 466 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 SESN3P58005 492 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 DRP2Q13474 957 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 ZFYVE27Q5T4F4 411 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 DCAF8Q5TAQ9 597 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 LRCH2Q5VUJ6 765 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 STYK1Q6J9G0 422 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 PIGWQ7Z7B1 504 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 NOP9Q86U38 636 aaKnown RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 SEC14L1Q92503 715 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 ZSWIM1Q9BR11 485 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 MTRF1LQ9UGC7 380 aaKnown RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 TTC7AQ9ULT0 858 aaPredicted RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 SLC12A4Q9UP95 1085 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 R3HDM2Q9Y2K5 976 aaKnown RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 GSTTP1A0A1W2PQM5 241 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 BTNL10A8MVZ5 291 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 F5H6K3 240 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 TARSP26639 723 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 ECE1P42892 770 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 MGAT5Q09328 741 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 LACTB2Q53H82 288 aaPredicted RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 SEL1L2Q5TEA6 688 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 RNF207Q6ZRF8 634 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 ZNF653Q96CK0 615 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 ACSF2Q96CM8 615 aaPredicted RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 FAXDC2Q96IV6 333 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 PARVGQ9HBI0 331 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 A1CFQ9NQ94 594 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 RASAL2Q9UJF2 1139 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 ZNF646O15015 1829 aaPredicted RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 BRCA1P38398 1863 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 WDR91A4D1P6 747 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 DNAJC8O75937 253 aaPredicted RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 NQO1P15559 274 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 ICA1Q05084 483 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 CALCOCO2Q13137 446 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 DNAJC3Q13217 504 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 VSTM1Q6UX27 236 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 CCDC50Q8IVM0 306 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 SLFN12Q8IYM2 578 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 C1orf131Q8NDD1 294 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 HAUS1Q96CS2 278 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 BORCS6Q96GS4 357 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 TGS1Q96RS0 853 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 YIPF3Q9GZM5 350 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 METTL14Q9HCE5 456 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 AAASQ9NRG9 546 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 VAV3Q9UKW4 847 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 NAV1Q8NEY1 1877 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 PITPNM2Q9BZ72 1349 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 ANKRD62A6NC57 917 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 BHMG1C9JSJ3 638 aaPredicted RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 CES2O00748 559 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 LGR5O75473 907 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 PDHA1P08559 390 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 EIF3BP55884 814 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 TMED2Q15363 201 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 SGO2Q562F6 1265 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 GPATCH4Q5T3I0 446 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 FBXO11Q86XK2 927 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 PASD1Q8IV76 773 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 PLEKHO2Q8TD55 490 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 SLC5A5Q92911 643 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 ETNK1Q9HBU6 452 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 ALG13Q9NP73 1137 aaKnown RBP13.23□□□□□ -0.29
LDLR-205ENST00000557933 USTQ9Y2C2 406 aa13.23□□□□□ -0.29
LDLR-205ENST00000557933 EME2A4GXA9 379 aaPredicted RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 THAP12O43422 761 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 BANF1O75531 89 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 NUDT17P0C025 328 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 ARP10275 920 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 ALDH1B1P30837 517 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 GCKP35557 465 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 COILP38432 576 aaPredicted RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 CERKLQ49MI3 558 aaPredicted RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 GRIPAP1Q4V328 841 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 SYCP2LQ5T4T6 812 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 TLDC1Q6P9B6 456 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 TEX2Q8IWB9 1127 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 SP8Q8IXZ3 490 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 C4orf33Q8N1A6 199 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 UBL4BQ8N7F7 174 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 ZNF564Q8TBZ8 553 aaPredicted RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 RSRC1Q96IZ7 334 aaKnown RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 NKX1-2Q9UD57 310 aaPredicted RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 USP15Q9Y4E8 981 aaPredicted RBP13.22□□□□□ -0.29
LDLR-205ENST00000557933 IGKV6D-41A0A0C4DH26 115 aa13.22□□□□□ -0.29
LDLR-205ENST00000557933 HIP1RO75146 1068 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms