RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ATL3Q6DD88 541 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 EFCAB12Q6NXP0 572 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 ZNF710Q8N1W2 664 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 ST13P5Q8NFI4 369 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 RSPH1Q8WYR4 309 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 STAMQ92783 540 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 CHAMP1Q96JM3 812 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 ZNF668Q96K58 619 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 SPATA6Q9NWH7 488 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 DACT1Q9NYF0 836 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 SMG5Q9UPR3 1016 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 RALGAPA1Q6GYQ0 2036 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 AKAP13Q12802 2813 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 DMXL2Q8TDJ6 3036 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 KANSL1LA0AUZ9 987 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 SPDYE4A6NLX3 237 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 DDX39AO00148 427 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 INPPL1O15357 1258 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 MAGEB2O15479 319 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 LAMTOR5O43504 91 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 CCNT1O60563 726 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 CSDE1O75534 798 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 EFEMP2O95967 443 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 SSBP05455 408 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 SREBF1P36956 1147 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 GPC5P78333 572 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 CSTF1Q05048 431 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 DNM1Q05193 864 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 STK38Q15208 465 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 SF3A1Q15459 793 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 NOMO2Q5JPE7 1267 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 EARS2Q5JPH6 523 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 PPM1JQ5JR12 505 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 LRRC71Q8N4P6 559 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 ATRIPQ8WXE1 791 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 OSBPL6Q9BZF3 934 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 CHST12Q9NRB3 414 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 ZSCAN32Q9NX65 697 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 TFIP11Q9UBB9 837 aaKnown RBP13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 AKT3Q9Y243 479 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 NUMBLQ9Y6R0 609 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 ITPR1Q14643 2758 aa13.9□□□□□ -0.18
CLSTN3-208ENST00000538933 SLC30A4O14863 429 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 TEX28O15482 410 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 ZNF623O75123 536 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 DDHD2O94830 711 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 BMP15O95972 392 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 GCFC2P16383 781 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 MCM7P33993 719 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 USP11P51784 963 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 AFF1P51825 1210 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 SNW1Q13573 536 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 ZNF174Q15697 407 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 LONRF3Q496Y0 759 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 MIS18BP1Q6P0N0 1132 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 NIPA1Q7RTP0 329 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 TAS1R1Q7RTX1 841 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 SMG7Q92540 1137 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 SHDQ96IW2 340 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 SPATA32Q96LK8 384 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 RPS6KC1Q96S38 1066 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 BCO2Q9BYV7 579 aa13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 MRPL17Q9NRX2 175 aaKnown RBP13.89□□□□□ -0.19
CLSTN3-208ENST00000538933 GCN1Q92616 2671 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 FAM86B1E9PN63 330 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 TBC1D4O60343 1298 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 BAG4O95429 457 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 FAM86B2P0C5J1 330 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 MYBP10242 640 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 GLB1LQ6UWU2 654 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 TRMT1LQ7Z2T5 733 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 CKAP2LQ8IYA6 745 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 RNF168Q8IYW5 571 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 FGF14Q92915 247 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 SECISBP2LQ93073 1101 aaKnown RBP13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 CLDN23Q96B33 292 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 USP28Q96RU2 1077 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 MAP7D2Q96T17 732 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 SCAND2PQ9GZW5 306 aaPredicted RBP13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 NT5C3AQ9H0P0 336 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 RXFP1Q9HBX9 757 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 STK39Q9UEW8 545 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 USP18Q9UMW8 372 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 PCDHB6Q9Y5E3 794 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 NOTCH4Q99466 2003 aa13.88□□□□□ -0.19
CLSTN3-208ENST00000538933 IGLV3-22A0A075B6J6 115 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 FAM170BA6NMN3 283 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 NEMFO60524 1076 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 SPATA31D3P0C874 917 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 HOXB3P14651 431 aaPredicted RBP13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 ORC2Q13416 577 aaPredicted RBP13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 FZD5Q13467 585 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 NBR1Q14596 966 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 SLC44A4Q53GD3 710 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 TSSK4Q6SA08 328 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 PARM1Q6UWI2 310 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 SPATA31D4Q6ZUB0 917 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 HDAC7Q8WUI4 952 aa13.87□□□□□ -0.19
CLSTN3-208ENST00000538933 CRYGNQ8WXF5 182 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms