RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 OTOP3Q7RTS5 596 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 HACE1Q8IYU2 909 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 PIGOQ8TEQ8 1089 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 ACSF2Q96CM8 615 aaPredicted RBP12.6□□□□□ -0.39
VPS28-214ENST00000531032 CCDC43Q96MW1 224 aaKnown RBP12.6□□□□□ -0.39
VPS28-214ENST00000531032 TRIM6Q9C030 488 aaPredicted RBP12.6□□□□□ -0.39
VPS28-214ENST00000531032 POLR3FQ9H1D9 316 aaPredicted RBP12.6□□□□□ -0.39
VPS28-214ENST00000531032 TMEM60Q9H2L4 133 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 RXFP1Q9HBX9 757 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 MAN1C1Q9NR34 630 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 CHST7Q9NS84 486 aa12.6□□□□□ -0.39
VPS28-214ENST00000531032 GALR2O43603 387 aaPredicted RBP12.59□□□□□ -0.39
VPS28-214ENST00000531032 USO1O60763 962 aaKnown RBP12.59□□□□□ -0.39
VPS28-214ENST00000531032 NR1I2O75469 434 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 GLUD1P00367 558 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 C1RP00736 705 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 GRIK3Q13003 919 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 CDCA2Q69YH5 1023 aaPredicted RBP12.59□□□□□ -0.39
VPS28-214ENST00000531032 CYP26C1Q6V0L0 522 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 PPP4R3CPQ6ZMV5 832 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 GPR65Q8IYL9 337 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 TMEM105Q8N8V8 129 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 PRIMPOLQ96LW4 560 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 COLEC11Q9BWP8 271 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 APOL6Q9BWW8 343 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 TUFT1Q9NNX1 390 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 DPP7Q9UHL4 492 aa12.59□□□□□ -0.39
VPS28-214ENST00000531032 A0A087WWV3 80 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 NPTXRO95502 500 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 AKAP5P24588 427 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 MCM7P33993 719 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 NEK4P51957 841 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 FOSBP53539 338 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 TDGQ13569 410 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 FAM187BQ17R55 369 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 ASTLQ6HA08 431 aaPredicted RBP12.58□□□□□ -0.4
VPS28-214ENST00000531032 FUT10Q6P4F1 479 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 ELMSAN1Q6PJG2 1045 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 CDR2LQ86X02 465 aaPredicted RBP12.58□□□□□ -0.4
VPS28-214ENST00000531032 CATSPER3Q86XQ3 398 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 MCPH1Q8NEM0 835 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 HDAC7Q8WUI4 952 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 GPR62Q9BZJ7 368 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 KCNK12Q9HB15 430 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 WDR6Q9NNW5 1121 aaKnown RBP12.58□□□□□ -0.4
VPS28-214ENST00000531032 GPRC5CQ9NQ84 441 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 FAM86C1Q9NVL1 165 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 MYO15AQ9UKN7 3530 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 ADAM28Q9UKQ2 775 aa12.58□□□□□ -0.4
VPS28-214ENST00000531032 MTCL1Q9Y4B5 1905 aaKnown RBP12.57□□□□□ -0.4
VPS28-214ENST00000531032 CCDC195A0A1B0GUA6 201 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 LRRIQ4A6NIV6 560 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 H0Y858 1186 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 N4BP1O75113 896 aaKnown RBP12.57□□□□□ -0.4
VPS28-214ENST00000531032 MED24O75448 989 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 CLCN5P51795 746 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 USP41Q3LFD5 358 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 MAEAQ7L5Y9 396 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 ATOH1Q92858 354 aaPredicted RBP12.57□□□□□ -0.4
VPS28-214ENST00000531032 B3GALT6Q96L58 329 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 POLR3CQ9BUI4 534 aaPredicted RBP12.57□□□□□ -0.4
VPS28-214ENST00000531032 FZD8Q9H461 694 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 PLEKHA4Q9H4M7 779 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS28-214ENST00000531032 PRMT7Q9NVM4 692 aaPredicted RBP12.57□□□□□ -0.4
VPS28-214ENST00000531032 FNIP2Q9P278 1114 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 IGSF9Q9P2J2 1179 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 DUSP12Q9UNI6 340 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 CLUHO75153 1309 aa12.57□□□□□ -0.4
VPS28-214ENST00000531032 PROB1E7EW31 1015 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 ST18O60284 1047 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 EIF5BO60841 1220 aaKnown RBP12.56□□□□□ -0.4
VPS28-214ENST00000531032 RFPL2O75678 378 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 ATP2B1P20020 1258 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 RPA1P27694 616 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 CREMQ03060 361 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 ORC2Q13416 577 aaPredicted RBP12.56□□□□□ -0.4
VPS28-214ENST00000531032 SAFBQ15424 915 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS28-214ENST00000531032 CWF19L1Q69YN2 538 aaKnown RBP12.56□□□□□ -0.4
VPS28-214ENST00000531032 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 ZBTB8OSQ8IWT0 167 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 STAMQ92783 540 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 ZNF707Q96C28 371 aaPredicted RBP12.56□□□□□ -0.4
VPS28-214ENST00000531032 NACC1Q96RE7 527 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 MFSD1Q9H3U5 465 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 PDZD7Q9H5P4 517 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 ZDHHC7Q9NXF8 308 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 KLK14Q9P0G3 267 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 EPS15L1Q9UBC2 864 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 PARP2Q9UGN5 583 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 DOCK8Q8NF50 2099 aa12.56□□□□□ -0.4
VPS28-214ENST00000531032 SF3B1O75533 1304 aaKnown RBP eCLIP12.56□□□□□ -0.45e-6■■■■■ 49.5
VPS28-214ENST00000531032 TTLL13PA6NNM8 815 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 N4BP3O15049 544 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 TGM5O43548 720 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 GFRA3O60609 400 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 OR52Z1P0C646 297 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 NPR3P17342 541 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 GUCY1B3Q02153 619 aa12.55□□□□□ -0.4
VPS28-214ENST00000531032 TUSC3Q13454 348 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms