RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PHACTR2O75167 634 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 INSRRP14616 1297 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 EIF4A3P38919 411 aaKnown RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 CACNB2Q08289 660 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 MKRN4PQ13434 485 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 ASTE1Q2TB18 679 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 PIAS4Q8N2W9 510 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 ZNF296Q8WUU4 475 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 DUSP10Q9Y6W6 482 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 ZMYND10O75800 440 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 LCA5LO95447 670 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 UCHL3P15374 230 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 DLG4P78352 724 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 MAPK8IP2Q13387 824 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 DGKDQ16760 1214 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 BEND6Q5SZJ8 279 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 SFMBT2Q5VUG0 894 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 FAM167AQ96KS9 214 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 NUCKS1Q9H1E3 243 aaKnown RBP13.2□□□□□ -0.3
HDAC6-230ENST00000488543 FBXL5Q9UKA1 691 aa13.2□□□□□ -0.3
HDAC6-230ENST00000488543 MYADML2A6NDP7 307 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 A6NJR5 290 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 MAFO75444 373 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-230ENST00000488543 ATP1A1P05023 1023 aaKnown RBP13.19□□□□□ -0.3
HDAC6-230ENST00000488543 CYBAP13498 195 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 CYP27A1Q02318 531 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 ZNF662Q6ZS27 426 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 INTS8Q75QN2 995 aaKnown RBP13.19□□□□□ -0.3
HDAC6-230ENST00000488543 GSPT2Q8IYD1 628 aaKnown RBP13.19□□□□□ -0.3
HDAC6-230ENST00000488543 AIPL1Q9NZN9 384 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 SRRDQ9UH36 339 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 GOLGA8IPA6NC78 632 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 GOLGA8JA6NMD2 632 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 PGK1P00558 417 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 KRT13P13646 458 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 CCND3P30281 292 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-230ENST00000488543 NAMPTP43490 491 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 VAMP7P51809 220 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 KIF11P52732 1056 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 JAM2P57087 298 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 MFSD14CQ5VZR4 134 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 GJB7Q6PEY0 223 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 CBWD2Q8IUF1 395 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 METTL13Q8N6R0 699 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 PRPF31Q8WWY3 499 aaKnown RBP13.19□□□□□ -0.3
HDAC6-230ENST00000488543 KAT2BQ92831 832 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 CCDC42Q96M95 316 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 FBXL18Q96ME1 805 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 VPS18Q9P253 973 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 PPME1Q9Y570 386 aa13.19□□□□□ -0.3
HDAC6-230ENST00000488543 SSU72P8A0A1W2PR75 194 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 CCDC151A5D8V7 595 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 H0YCG3 227 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 ZNF185O15231 689 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 HBP1O60381 514 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 SERPING1P05155 500 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 SLC26A2P50443 739 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 KRT83P78385 493 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 MRPS25P82663 173 aaKnown RBP13.18□□□□□ -0.3
HDAC6-230ENST00000488543 MYL7Q01449 175 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 PPP3CAQ08209 521 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 RAPGEF1Q13905 1077 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 IQCEQ6IPM2 695 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 CEP112Q8N8E3 955 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 LMO3Q8TAP4 145 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 SAAL1Q96ER3 474 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 LACRTQ9GZZ8 138 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 MYO6Q9UM54 1294 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 MKI67P46013 3256 aaKnown RBP13.18□□□□□ -0.3
HDAC6-230ENST00000488543 IGKV6-21A0A0C4DH24 114 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 HOXD8P13378 290 aaPredicted RBP13.18□□□□□ -0.3
HDAC6-230ENST00000488543 PRKAR2AP13861 404 aaKnown RBP13.18□□□□□ -0.3
HDAC6-230ENST00000488543 AKR1A1P14550 325 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 KLRC1P26715 233 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 LMAN1P49257 510 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 CLCN3P51790 818 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 AMPD2Q01433 879 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 BRDTQ58F21 947 aaPredicted RBP13.18□□□□□ -0.3
HDAC6-230ENST00000488543 EFCAB12Q6NXP0 572 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 MMS19Q96T76 1030 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 INTS2Q9H0H0 1204 aaKnown RBP13.18□□□□□ -0.3
HDAC6-230ENST00000488543 KCNG1Q9UIX4 513 aa13.18□□□□□ -0.3
HDAC6-230ENST00000488543 CTAGE15A4D2H0 777 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 ADCY3O60266 1144 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 MYCNP04198 464 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-230ENST00000488543 EDN1P05305 212 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 C6orf222P0C671 652 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-230ENST00000488543 CTAGE8P0CG41 777 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 SRGAP2CP0DJJ0 459 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 GARTP22102 1010 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 CAPSQ13938 189 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 ASIC2Q16515 512 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 SNRNP35Q16560 246 aaKnown RBP13.17□□□□□ -0.3
HDAC6-230ENST00000488543 CCDC122Q5T0U0 273 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 IRF2BP2Q7Z5L9 587 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 CTAGE6Q86UF2 777 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 CTAGE4Q8IX94 777 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 PPP1R16BQ96T49 567 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 AP5M1Q9H0R1 490 aa13.17□□□□□ -0.3
HDAC6-230ENST00000488543 HAUS4Q9H6D7 363 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms