RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 BRAFP15056 766 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 SPIRE1Q08AE8 756 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 STRN3Q13033 797 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 MTFR1Q15390 333 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 PARP6Q2NL67 630 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 MIGA2Q7L4E1 593 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 SLC13A5Q86YT5 568 aaPredicted RBP14.24□□□□□ -0.13
USP40-214ENST00000483519 EXOC8Q8IYI6 725 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 C12orf50Q8NA57 414 aaPredicted RBP14.24□□□□□ -0.13
USP40-214ENST00000483519 DDX23Q9BUQ8 820 aaKnown RBP14.24□□□□□ -0.13
USP40-214ENST00000483519 TRIM33Q9UPN9 1127 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 A6NHS1 94 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 RSPH10B2B2RC85 870 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 TBX3O15119 743 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 RSPH10BP0C881 870 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 POTEJP0CG39 1038 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 COMTP21964 271 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 EIF6P56537 245 aaKnown RBP14.24□□□□□ -0.13
USP40-214ENST00000483519 GPC5P78333 572 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 MYL7Q01449 175 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 SETDB1Q15047 1291 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 AP1ARQ63HQ0 302 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 PPP1R21Q6ZMI0 780 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 PALB2Q86YC2 1186 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 ZDHHC14Q8IZN3 488 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 MLXIPLQ9NP71 852 aa14.24□□□□□ -0.13
USP40-214ENST00000483519 FTLP02792 175 aaPredicted RBP14.23□□□□□ -0.13
USP40-214ENST00000483519 SPATA31C1P0DKV0 1188 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 BCRP11274 1271 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 CREB1P16220 341 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 PEX5P50542 639 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 KCNA1Q09470 495 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 ARHGAP44Q17R89 818 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 FRMD4BQ9Y2L6 1034 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L15C9J2P7 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L13C9JLJ4 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L11C9JVI0 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L18D6R9N7 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L22D6RA61 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L17D6RBQ6 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L19D6RCP7 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L20D6RJB6 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 ABLIM1O14639 778 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 PYGMP11217 842 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L24Q0WX57 530 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 MESDQ14696 234 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L6PQ6QN14 398 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 APLFQ8IW19 511 aaPredicted RBP14.23□□□□□ -0.13
USP40-214ENST00000483519 LMNTD2Q8IXW0 634 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 AGGF1Q8N302 714 aaeCLIP14.23□□□□□ -0.13
USP40-214ENST00000483519 ETNPPLQ8TBG4 499 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 VTI1AQ96AJ9 217 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 FAM167BQ9BTA0 163 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 LRMDAQ9H2I8 198 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 BHMT2Q9H2M3 363 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 RNPEPL1Q9HAU8 725 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 ADGRA3Q8IWK6 1321 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 ZMYM2Q9UBW7 1377 aa14.23□□□□□ -0.13
USP40-214ENST00000483519 USP17L10C9JJH3 530 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 ABL2P42684 1182 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 TGFB2P61812 414 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 CBWD6Q4V339 395 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 CBWD3Q5JTY5 395 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 CBWD5Q5RIA9 395 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 TTBK2Q6IQ55 1244 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 RNF207Q6ZRF8 634 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 HS2ST1Q7LGA3 356 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 ECHDC2Q86YB7 292 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 SLF2Q8IX21 1173 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 KCNV2Q8TDN2 545 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 SLCO2A1Q92959 643 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 RUSC1Q9BVN2 902 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 YIPF3Q9GZM5 350 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 LRRC19Q9H756 370 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 RABGAP1Q9Y3P9 1069 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 IGKV6D-41A0A0C4DH26 115 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 LRRN2O75325 713 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 TCEA3O75764 348 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 FAM13AO94988 1023 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 TTC4O95801 387 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 GH1P01241 217 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 ITIH2P19823 946 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 CALB2P22676 271 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 AP3B2Q13367 1082 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 PRR16Q569H4 304 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 CMPK2Q5EBM0 449 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 DPP8Q6V1X1 898 aaPredicted RBP14.22□□□□□ -0.13
USP40-214ENST00000483519 PLVAPQ9BX97 442 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 PITPNM3Q9BZ71 974 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 LRRC42Q9Y546 428 aa14.22□□□□□ -0.13
USP40-214ENST00000483519 FAM170AA1A519 330 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 ENO4A6NNW6 628 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 SPOPO43791 374 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 MTA2O94776 668 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 EYA4O95677 639 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 LINGO3P0C6S8 592 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 NEFHP12036 1026 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 AKR1B1P15121 316 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 GNAZP19086 355 aa14.21□□□□□ -0.13
USP40-214ENST00000483519 SLC16A2P36021 539 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms