RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 THAP12O43422 761 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 GJB6O95452 261 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 PTGER2P43116 358 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 CALCOCO2Q13137 446 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 PCNX4Q63HM2 1172 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 TRIM50Q86XT4 487 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 CCDC60Q8IWA6 550 aaPredicted RBP12.87□□□□□ -0.35
SMPD4-213ENST00000454468 C18orf8Q96DM3 657 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 LCMT1Q9UIC8 334 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 PCDHGC5Q9Y5F6 944 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 ANKRD62A6NC57 917 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 GOLGA8KD6RF30 607 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 IFNB1P01574 187 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 GUCY2CP25092 1073 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 NSFP46459 744 aaKnown RBP12.87□□□□□ -0.35
SMPD4-213ENST00000454468 BRDTQ58F21 947 aaPredicted RBP12.87□□□□□ -0.35
SMPD4-213ENST00000454468 EP400NLQ6ZTU2 488 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 MOB2Q70IA6 237 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 TRPM4Q8TD43 1214 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 PPP1R13LQ8WUF5 828 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 GMLQ99445 158 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 TEX13BQ9BXU2 312 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 RAB20Q9NX57 234 aa12.87□□□□□ -0.35
SMPD4-213ENST00000454468 WNK3Q9BYP7 1800 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 GOLGA8SH3BPF8 625 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 MYO1FO00160 1098 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 CLDN3O15551 220 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NR1D1P20393 614 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 PPP2R5AQ15172 486 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 MIS18BP1Q6P0N0 1132 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 SV2AQ7L0J3 742 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 AENQ8WTP8 325 aaKnown RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 BSNDQ8WZ55 320 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ZBTB10Q96DT7 871 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 FMO2Q99518 471 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 KIAA1683Q9H0B3 1180 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ACAD9Q9H845 621 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ELP3Q9H9T3 547 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ATP6V0A4Q9HBG4 840 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 MLXIPLQ9NP71 852 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 FAM53CQ9NYF3 392 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ATRNL1Q5VV63 1379 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ZMYM2Q9UBW7 1377 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NPM3O75607 178 aaKnown RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 PRLRP16471 622 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 FLT3P36888 993 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 MARSP56192 900 aaKnown RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 MAPK7Q13164 816 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 TRPC3Q13507 836 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 CCDC38Q502W7 563 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 DCUN1D2Q6PH85 259 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NOP9Q86U38 636 aaKnown RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 SULF1Q8IWU6 871 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 SEMA4DQ92854 862 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ACSF2Q96CM8 615 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 INPP4AQ96PE3 977 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 MKNK1Q9BUB5 465 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 KCNK9Q9NPC2 374 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NHSQ6T4R5 1651 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 PI4K2BG5E9Z4 385 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ACSL3O95573 720 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ORC1Q13415 861 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 STXBP2Q15833 593 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NT5DC3Q86UY8 548 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NEK9Q8TD19 979 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ATG4AQ8WYN0 398 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 RNF25Q96BH1 459 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 NAP1L3Q99457 506 aaPredicted RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 A1CFQ9NQ94 594 aaKnown RBP12.86□□□□□ -0.35
SMPD4-213ENST00000454468 ZNF302Q9NR11 478 aa12.86□□□□□ -0.35
SMPD4-213ENST00000454468 LCA5LO95447 670 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 MMP14P50281 582 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 LRRC31Q6UY01 552 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 CPLX4Q7Z7G2 160 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 SCYL3Q8IZE3 742 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 TBK1Q9UHD2 729 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 AGPSO00116 658 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 PTPRAP18433 802 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 FGFR4P22455 802 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 DYNLT1P63172 113 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 TMEM132BQ14DG7 1078 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 ALG3Q92685 438 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 TRIM7Q9C029 511 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 AGO2Q9UKV8 859 aaKnown RBP12.85□□□□□ -0.35
SMPD4-213ENST00000454468 PIK3R2O00459 728 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 ZNF862O60290 1169 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 DDNO94850 711 aaPredicted RBP12.85□□□□□ -0.35
SMPD4-213ENST00000454468 SFNP31947 248 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 GLE1Q53GS7 698 aaKnown RBP12.85□□□□□ -0.35
SMPD4-213ENST00000454468 SGO2Q562F6 1265 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 RAB17Q9H0T7 212 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 RBAKQ9NYW8 714 aaPredicted RBP12.85□□□□□ -0.35
SMPD4-213ENST00000454468 MTRF1LQ9UGC7 380 aaKnown RBP12.85□□□□□ -0.35
SMPD4-213ENST00000454468 FBXO40Q9UH90 709 aa12.85□□□□□ -0.35
SMPD4-213ENST00000454468 DHX15O43143 795 aaKnown RBP12.84□□□□□ -0.35
SMPD4-213ENST00000454468 TMEM253P0C7T8 217 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 HOXA7P31268 230 aaPredicted RBP12.84□□□□□ -0.35
SMPD4-213ENST00000454468 IRAK1P51617 712 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 FSTL1Q12841 308 aa12.84□□□□□ -0.35
SMPD4-213ENST00000454468 DENND2CQ68D51 928 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms