RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 ZDHHC18Q9NUE0 388 aa17.25■□□□□ 0.35
SHQ1-202ENST00000444040 EBAG9O00559 213 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 ZNF862O60290 1169 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 STBD1O95210 358 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 COMTP21964 271 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 DHX9Q08211 1270 aaKnown RBP17.24■□□□□ 0.35
SHQ1-202ENST00000444040 BAATQ14032 418 aaPredicted RBP17.24■□□□□ 0.35
SHQ1-202ENST00000444040 DHX34Q14147 1143 aaKnown RBP17.24■□□□□ 0.35
SHQ1-202ENST00000444040 ZDHHC14Q8IZN3 488 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 UBL4BQ8N7F7 174 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 SPIRE2Q8WWL2 714 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 MFSD14AQ96MC6 490 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 TRIM31Q9BZY9 425 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 PCDHA10Q9Y5I2 948 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 FAM187AA6NFU0 413 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 PPFIA2O75334 1257 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 MDH1P40925 334 aaKnown RBP17.24■□□□□ 0.35
SHQ1-202ENST00000444040 XRRA1Q6P2D8 792 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 TMC2Q8TDI7 906 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 KMT5AQ9NQR1 393 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.24■□□□□ 0.35
SHQ1-202ENST00000444040 TCEAL9Q9UHQ7 104 aa17.24■□□□□ 0.35
SHQ1-202ENST00000444040 CTDP1Q9Y5B0 961 aaPredicted RBP17.24■□□□□ 0.35
SHQ1-202ENST00000444040 ATMINO43313 823 aaPredicted RBP17.23■□□□□ 0.35
SHQ1-202ENST00000444040 FDX1P10109 184 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 CYP11B1P15538 503 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 SOX10P56693 466 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 MESDQ14696 234 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 JAMLQ86YT9 394 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 PRELID2Q8N945 189 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 TAS1R2Q8TE23 839 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 GPRASP2Q96D09 838 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 FMO2Q99518 471 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 TOPORSQ9NS56 1045 aaPredicted RBP17.23■□□□□ 0.35
SHQ1-202ENST00000444040 RNF146Q9NTX7 359 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 TRPC6Q9Y210 931 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 CYP1A2P05177 515 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 NR3C2P08235 984 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 PTGIRP43119 386 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 DRG2P55039 364 aaKnown RBP17.23■□□□□ 0.35
SHQ1-202ENST00000444040 BIRC3Q13489 604 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 RUFY4Q6ZNE9 571 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 MORC4Q8TE76 937 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 KIFAP3Q92845 792 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 EPN3Q9H201 632 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 C17orf75Q9HAS0 396 aa17.23■□□□□ 0.35
SHQ1-202ENST00000444040 ADGRA3Q8IWK6 1321 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 TMEM110-MUSTN1A8MSY1 372 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 PHF2O75151 1096 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 HSPA6P17066 643 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 CTNNA2P26232 953 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 MAGEA9P43362 315 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 SPDYCQ5MJ68 293 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 NLRX1Q86UT6 975 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 FBXL13Q8NEE6 735 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 REPS2Q8NFH8 660 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 DDX1Q92499 740 aaKnown RBP17.22■□□□□ 0.35
SHQ1-202ENST00000444040 WNT8AQ9H1J5 351 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 PDLIM7Q9NR12 457 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 RAB20Q9NX57 234 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 GABBR1Q9UBS5 961 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 NDUFAB1O14561 156 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 KIAA0391O15091 583 aaKnown RBP17.22■□□□□ 0.35
SHQ1-202ENST00000444040 MAFGO15525 162 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 RGS20O76081 388 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 KCNA2P16389 499 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 CCND2P30279 289 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 CDR2Q01850 454 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 SLC20A2Q08357 652 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 PTGISQ16647 500 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 C18orf8Q96DM3 657 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 CEP170P1Q96L14 293 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 CENPHQ9H3R5 247 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 GTF3C4Q9UKN8 822 aa17.22■□□□□ 0.35
SHQ1-202ENST00000444040 GRIN3BO60391 1043 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 CHRNA3P32297 505 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 CYP24A1Q07973 514 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 AGBL2Q5U5Z8 902 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 ZDHHC24Q6UX98 284 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 SV2AQ7L0J3 742 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 OTUD6AQ7L8S5 288 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 CPNE8Q86YQ8 564 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 ZNF564Q8TBZ8 553 aaPredicted RBP17.21■□□□□ 0.35
SHQ1-202ENST00000444040 NUP85Q9BW27 656 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 PCYOX1Q9UHG3 505 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 SLC12A6Q9UHW9 1150 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 TELO2Q9Y4R8 837 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 PYGMP11217 842 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 HPDP32754 393 aaPredicted RBP17.21■□□□□ 0.35
SHQ1-202ENST00000444040 GTF2H1P32780 548 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 BACE1P56817 501 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 TTC27Q6P3X3 843 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 AEBP2Q6ZN18 517 aaPredicted RBP17.21■□□□□ 0.35
SHQ1-202ENST00000444040 ARFGAP2Q8N6H7 521 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 NT5C1BQ96P26 610 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 EPB41L4BQ9H329 900 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 LRRC4CQ9HCJ2 640 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 XPNPEP1Q9NQW7 623 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 PCDHA3Q9Y5H8 950 aa17.21■□□□□ 0.35
SHQ1-202ENST00000444040 FAM169AQ9Y6X4 670 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms