RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CPA5Q8WXQ8 436 aa18.22■□□□□ 0.51
PTPRF-209ENST00000438120 HERC5Q9UII4 1024 aaKnown RBP18.22■□□□□ 0.51
PTPRF-209ENST00000438120 FBXO2Q9UK22 296 aaPredicted RBP18.22■□□□□ 0.51
PTPRF-209ENST00000438120 SKIP12755 728 aa18.22■□□□□ 0.51
PTPRF-209ENST00000438120 BRAFP15056 766 aa18.22■□□□□ 0.51
PTPRF-209ENST00000438120 NNMTP40261 264 aa18.22■□□□□ 0.51
PTPRF-209ENST00000438120 FLT1P17948 1338 aa18.22■□□□□ 0.51
PTPRF-209ENST00000438120 PLEKHG2Q9H7P9 1386 aa18.22■□□□□ 0.51
PTPRF-209ENST00000438120 IZUMO3Q5VZ72 239 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 PID1Q7Z2X4 250 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 RMDN1Q96DB5 314 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 BTBD6Q96KE9 485 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 PPP1R36Q96LQ0 422 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 AGPAT1Q99943 283 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 OSBPL5Q9H0X9 879 aaPredicted RBP18.21■□□□□ 0.51
PTPRF-209ENST00000438120 ZDHHC9Q9Y397 364 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 CCDC78A2IDD5 438 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 TNPO2O14787 897 aaKnown RBP18.21■□□□□ 0.51
PTPRF-209ENST00000438120 FGFR4P22455 802 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 GRIK1P39086 918 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 MKRN4PQ13434 485 aaPredicted RBP18.21■□□□□ 0.51
PTPRF-209ENST00000438120 MTMR4Q9NYA4 1195 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 LIMA1Q9UHB6 759 aaKnown RBP18.21■□□□□ 0.51
PTPRF-209ENST00000438120 PNPLA7Q6ZV29 1317 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 TRPV6Q9H1D0 765 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 AMACRQ9UHK6 382 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 TNS3Q68CZ2 1445 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 PFDN1O60925 122 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 E2F4Q16254 413 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 RFX8Q6ZV50 586 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 PARVAQ9NVD7 372 aa18.21■□□□□ 0.51
PTPRF-209ENST00000438120 ABCC3O15438 1527 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 ZNF185O15231 689 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 ARSEP51690 589 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 SNF8Q96H20 258 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 HSPBP1Q9NZL4 362 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 CNOT7Q9UIV1 285 aaKnown RBP18.2■□□□□ 0.5
PTPRF-209ENST00000438120 CAPN11Q9UMQ6 739 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 AGAP1Q9UPQ3 857 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 TMEM247A6NEH6 219 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 RARBP10826 455 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 CHRNA3P32297 505 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 TRIML2Q8N7C3 387 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 ADAM21Q9UKJ8 722 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 GGPS1O95749 300 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 TGS1Q96RS0 853 aaKnown RBP18.2■□□□□ 0.5
PTPRF-209ENST00000438120 TRIM15Q9C019 465 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 WNT8AQ9H1J5 351 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 SCP2P22307 547 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 KRT17Q04695 432 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 FASTKD1Q53R41 847 aaKnown RBP18.2■□□□□ 0.5
PTPRF-209ENST00000438120 RGS9BPQ6ZS82 235 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 MS4A14Q96JA4 679 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 MAGEB5Q9BZ81 275 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 CYP4F11Q9HBI6 524 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 ORC2Q13416 577 aaPredicted RBP18.2■□□□□ 0.5
PTPRF-209ENST00000438120 AGAP3Q96P47 875 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 PLA2R1Q13018 1463 aa18.2■□□□□ 0.5
PTPRF-209ENST00000438120 ASB14A6NK59 587 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 HMBSP08397 361 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 MYBL1P10243 752 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 HNRNPH2P55795 449 aaKnown RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 CAV1Q03135 178 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 RBBP7Q16576 425 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 C1orf146Q5VVC0 180 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 N4BP2L2Q92802 583 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 ABTB1Q969K4 478 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 TMEM60Q9H2L4 133 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 TRPC7Q9HCX4 862 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 SNX9Q9Y5X1 595 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 NRKQ7Z2Y5 1582 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 MORF4L2Q15014 288 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 KCNV2Q8TDN2 545 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 NDUFB10O96000 172 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 EEF1DP29692 281 aaKnown RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 FSCBQ5H9T9 825 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 CDKL3Q8IVW4 592 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 SH3KBP1Q96B97 665 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 DDX56Q9NY93 547 aaKnown RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 ADA2Q9NZK5 511 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 BFARQ9NZS9 450 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 GOLGA8RI6L899 631 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 DYNC1LI2O43237 492 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 SULT1E1P49888 294 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 SH3BGRP55822 239 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 RFFLQ8WZ73 363 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 APOL1O14791 398 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 SESN2P58004 480 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 TMED8Q6PL24 325 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 REEP2Q9BRK0 252 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 IRX2Q9BZI1 471 aaPredicted RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 ZCCHC17Q9NP64 241 aaKnown RBP18.19■□□□□ 0.5
PTPRF-209ENST00000438120 FGFR1OP2Q9NVK5 253 aa18.19■□□□□ 0.5
PTPRF-209ENST00000438120 DNAJC6O75061 913 aa18.18■□□□□ 0.5
PTPRF-209ENST00000438120 COG2Q14746 738 aa18.18■□□□□ 0.5
PTPRF-209ENST00000438120 PLA2G4FQ68DD2 849 aa18.18■□□□□ 0.5
PTPRF-209ENST00000438120 FRMD5Q7Z6J6 570 aa18.18■□□□□ 0.5
PTPRF-209ENST00000438120 NUDCD3Q8IVD9 361 aa18.18■□□□□ 0.5
PTPRF-209ENST00000438120 DDIASQ8IXT1 998 aa18.18■□□□□ 0.5
PTPRF-209ENST00000438120 FBXL5Q9UKA1 691 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms