RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 PNNQ9H307 717 aaKnown RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 PIF1Q9H611 641 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 TOMM22Q9NS69 142 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 PLA2G3Q9NZ20 509 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 DENND2AQ9ULE3 1009 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 ZKSCAN5Q9Y2L8 839 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 RBM8AQ9Y5S9 174 aaKnown RBP4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 HS3ST3A1Q9Y663 406 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLC30A1Q9Y6M5 507 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 MST1RQ04912 1400 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 SSH2Q76I76 1423 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 C1orf167Q5SNV9 1468 aa4.87□□□□□ -1.63
HMGB3P20-201ENST00000417997 NHSL1Q5SYE7 1610 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 ABCA3Q99758 1704 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 CRYBG1Q9Y4K1 1723 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 FZD7O75084 574 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 H2AFYO75367 372 aaKnown RBP4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 SESN2P58004 480 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 HGFACQ04756 655 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 FOXL1Q12952 345 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 RIN1Q13671 783 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 TCEA2Q15560 299 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 DGKDQ16760 1214 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 CNNM4Q6P4Q7 775 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 HOMER1Q86YM7 354 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 ZFPM1Q8IX07 1006 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 GPR135Q8IZ08 494 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 EDAQ92838 391 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 EXTL1Q92935 676 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 RUNDC1Q96C34 613 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 RPL10LQ96L21 214 aaKnown RBP4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 NELFAQ9H3P2 528 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 TLR9Q9NR96 1032 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 TMEM260Q9NX78 707 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 MAGEC2Q9UBF1 373 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 B4GALT6Q9UBX8 382 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 VWA7Q9Y334 891 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 CD2APQ9Y5K6 639 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 FLT4P35916 1363 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLIT3O75094 1523 aa4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 VIRMAQ69YN4 1812 aaKnown RBP4.86□□□□□ -1.63
HMGB3P20-201ENST00000417997 CAPN14A8MX76 684 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 APAF1O14727 1248 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 GAS7O60861 476 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 HIBADHP31937 336 aaKnown RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 ANTXR2P58335 489 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 DUSP8Q13202 625 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 RRS1Q15050 365 aaKnown RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 TIGD7Q6NT04 549 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 Q6ZSN1 163 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 BCL6BQ8N143 479 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 Q8N1X5 172 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 NGEFQ8N5V2 710 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 C7orf31Q8N865 590 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 RPGRQ92834 1020 aaKnown RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 GFM2Q969S9 779 aaKnown RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 SLC7A6OSQ96CW6 309 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 DYDC2Q96IM9 177 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 RNPC3Q96LT9 517 aaKnown RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 ELF4Q99607 663 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 IFT57Q9NWB7 429 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 OXSMQ9NWU1 459 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 KCMF1Q9P0J7 381 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 POLKQ9UBT6 870 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 DNAI1Q9UI46 699 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 CTDP1Q9Y5B0 961 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 SBNO1A3KN83 1393 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 RTL1A6NKG5 1358 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 NFAT5O94916 1531 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 MED1Q15648 1581 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 RGPD2P0DJD1 1756 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 RGPD5Q99666 1765 aa4.85□□□□□ -1.63
HMGB3P20-201ENST00000417997 TNS3Q68CZ2 1445 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 KIF24Q5T7B8 1368 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 PNPLA6Q8IY17 1366 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 ZNF335Q9H4Z2 1342 aaPredicted RBP4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 NPIPB8E9PQR5 432 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 RFPL3O75679 317 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 AMPHP49418 695 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 BPIFB4P59827 614 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 FOXE3Q13461 319 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 TCIRG1Q13488 830 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 EPHA7Q15375 998 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 KRT40Q6A162 431 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 MAMDC4Q6UXC1 1216 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 C1orf210Q8IVY1 113 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 ANKRD53Q8N9V6 530 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 RTF1Q92541 710 aaKnown RBP4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 C16orf92Q96LL3 132 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 WDR92Q96MX6 357 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 POFUT1Q9H488 388 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 AGO3Q9H9G7 860 aaKnown RBP4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 MSL2Q9HCI7 577 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 FANCLQ9NW38 375 aa4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 H2AFY2Q9P0M6 372 aaPredicted RBP4.84□□□□□ -1.63
HMGB3P20-201ENST00000417997 ROBO1Q9Y6N7 1651 aa4.83□□□□□ -1.64
HMGB3P20-201ENST00000417997 CAMTA1Q9Y6Y1 1673 aa4.83□□□□□ -1.64
HMGB3P20-201ENST00000417997 ABCC6O95255 1503 aa4.83□□□□□ -1.64
HMGB3P20-201ENST00000417997 ARHGEF10O15013 1369 aa4.83□□□□□ -1.64
HMGB3P20-201ENST00000417997 NPHP3Q7Z494 1330 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms