RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ABCC6O95255 1503 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 TMEM150BA6NC51 233 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 RASA4BC9J798 803 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 RASA4O43374 803 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 NDUFB10O96000 172 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 ADRA2BP18089 450 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 ATP5DP30049 168 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 NSFP46459 744 aaKnown RBP12.74□□□□□ -0.37
HMGB1-206ENST00000405805 ZNF668Q96K58 619 aaPredicted RBP12.74□□□□□ -0.37
HMGB1-206ENST00000405805 NT5C1BQ96P26 610 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 AGPAT1Q99943 283 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 C11orf70Q9BRQ4 267 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 LXNQ9BS40 222 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 PI4KBQ9UBF8 816 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 TSC22D4Q9Y3Q8 395 aa12.74□□□□□ -0.37
HMGB1-206ENST00000405805 SKIP12755 728 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 CD58P19256 250 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 FECHP22830 423 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 ITGB3BPQ13352 177 aaPredicted RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SH3GL2Q99962 352 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 IMPG2Q9BZV3 1241 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 TRPC6Q9Y210 931 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 EXOC1LA0A1B0GW35 172 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 TMEM120BA0PK00 339 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 MSH4O15457 936 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 PIAS1O75925 651 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 STAT2P52630 851 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 KRT17Q04695 432 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 BYSLQ13895 437 aaKnown RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 DLGAP5Q15398 846 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 NANOGNBQ7Z5D8 188 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 CPA5Q8WXQ8 436 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 PWWP2AQ96N64 755 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 RIOX1Q9H6W3 641 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 MYH2Q9UKX2 1941 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 DISP2A7MBM2 1401 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 F8VZ95 297 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 hCG_1984214I3L0E3 225 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 GAP43P17677 238 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 HSPA9P38646 679 aaKnown RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 TSPY1Q01534 308 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 EDRF1Q3B7T1 1238 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 TMC3Q7Z5M5 1100 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SCYL3Q8IZE3 742 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 C4orf33Q8N1A6 199 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 ZNF713Q8N859 430 aaPredicted RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 TGS1Q96RS0 853 aaKnown RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 KLF6Q99612 283 aaPredicted RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 GPRC5CQ9NQ84 441 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 CCT8L1PA6NM43 557 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 FAM86B1E9PN63 330 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 EML1O00423 815 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 PJA2O43164 708 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 FAM86B2P0C5J1 330 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 VAMP7P51809 220 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SLMAPQ14BN4 828 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 PPP2R5EQ16537 467 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 DAB2IPQ5VWQ8 1189 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 RINT1Q6NUQ1 792 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 USP37Q86T82 979 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 LCA5Q86VQ0 697 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SP8Q8IXZ3 490 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SLC17A8Q8NDX2 589 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 RBM46Q8TBY0 533 aaKnown RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SLC35C1Q96A29 364 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 ACSF2Q96CM8 615 aaPredicted RBP12.73□□□□□ -0.37
HMGB1-206ENST00000405805 CYTH2Q99418 400 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 VCPKMTQ9H867 229 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 SAYSD1Q9NPB0 183 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 FBXO28Q9NVF7 368 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 APEX2Q9UBZ4 518 aa12.73□□□□□ -0.37
HMGB1-206ENST00000405805 MYO3BQ8WXR4 1341 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 RASSF2P50749 326 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 SKOR1P84550 965 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PPP1R21Q6ZMI0 780 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 CFAP61Q8NHU2 1237 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 RUNDC3BQ96NL0 473 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 STK33Q9BYT3 514 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 XAB2Q9HCS7 855 aaKnown RBP12.72□□□□□ -0.37
HMGB1-206ENST00000405805 C1orf112Q9NSG2 853 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PCDHGC5Q9Y5F6 944 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 GRIN2DO15399 1336 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 COL1A1P02452 1464 aaPredicted RBP12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PECAM1P16284 738 aaPredicted RBP12.72□□□□□ -0.37
HMGB1-206ENST00000405805 RPA1P27694 616 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PSMD6Q15008 389 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 CBWD6Q4V339 395 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 SLC44A4Q53GD3 710 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 CBWD3Q5JTY5 395 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 CBWD5Q5RIA9 395 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 PHLDB3Q6NSJ2 640 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 RHOT2Q8IXI1 618 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 LRRC8CQ8TDW0 803 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 RAB3IPQ96QF0 476 aaPredicted RBP12.72□□□□□ -0.37
HMGB1-206ENST00000405805 CBWD1Q9BRT8 395 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 AIPL1Q9NZN9 384 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 CTNNAL1Q9UBT7 734 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 SGK1O00141 431 aa12.72□□□□□ -0.37
HMGB1-206ENST00000405805 IPO5O00410 1097 aaKnown RBP12.72□□□□□ -0.37
HMGB1-206ENST00000405805 SGPL1O95470 568 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms