RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ZNF646O15015 1829 aaPredicted RBP22.17■■□□□ 1.14
CLK3-202ENST00000395066 SYNGAP1Q96PV0 1343 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 RARRES1P49788 294 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 PEX3P56589 373 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 XRCC4Q13426 336 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 DHX34Q14147 1143 aaKnown RBP22.17■■□□□ 1.14
CLK3-202ENST00000395066 SPDYCQ5MJ68 293 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 ERMARDQ5T6L9 678 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 FAM228AQ86W67 206 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 KCTD17Q8N5Z5 321 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 DHX38Q92620 1227 aaKnown RBP22.17■■□□□ 1.14
CLK3-202ENST00000395066 KDM4CQ9H3R0 1056 aa22.17■■□□□ 1.14
CLK3-202ENST00000395066 LARSQ9P2J5 1176 aaKnown RBP22.17■■□□□ 1.14
CLK3-202ENST00000395066 FAM187AA6NFU0 413 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 MXI1P50539 228 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 PLA2G4FQ68DD2 849 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 HAUS6Q7Z4H7 955 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 CPXCR1Q8N123 301 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 CENPTQ96BT3 561 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 NUP85Q9BW27 656 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 TMEM39BQ9GZU3 492 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 KCND2Q9NZV8 630 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 NOCTQ9UK39 431 aaKnown RBP22.16■■□□□ 1.14
CLK3-202ENST00000395066 TPX2Q9ULW0 747 aaKnown RBP22.16■■□□□ 1.14
CLK3-202ENST00000395066 SPOPO43791 374 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 C21orf2O43822 256 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 C11orf63Q6NUN7 778 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 KRT27Q7Z3Y8 459 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 TAX1BP1Q86VP1 789 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 HOOK3Q86VS8 718 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 CEP57Q86XR8 500 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 CCDC105Q8IYK2 499 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 XXYLT1Q8NBI6 393 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 CHURC1Q8WUH1 139 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 FAM129AQ9BZQ8 928 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 ADAM7Q9H2U9 754 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 QTRT2Q9H974 415 aaKnown RBP22.16■■□□□ 1.14
CLK3-202ENST00000395066 CCPG1Q9ULG6 757 aa22.16■■□□□ 1.14
CLK3-202ENST00000395066 DHX15O43143 795 aaKnown RBP22.15■■□□□ 1.14
CLK3-202ENST00000395066 GHRP10912 638 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 FKBP1AP62942 108 aaKnown RBP22.15■■□□□ 1.14
CLK3-202ENST00000395066 NBPF9Q3BBW0 867 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 SCLT1Q96NL6 688 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 ACCSQ96QU6 501 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 CCDC113Q9H0I3 377 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 ZBTB12Q9Y330 459 aaPredicted RBP22.15■■□□□ 1.14
CLK3-202ENST00000395066 PCDHA3Q9Y5H8 950 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 RTN2O75298 545 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 RAD17O75943 681 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 NF2P35240 595 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 SOX10P56693 466 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 CETN1Q12798 172 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 ZNF564Q8TBZ8 553 aaPredicted RBP22.15■■□□□ 1.14
CLK3-202ENST00000395066 MAGEC3Q8TD91 643 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 HERC5Q9UII4 1024 aaKnown RBP22.15■■□□□ 1.14
CLK3-202ENST00000395066 RASAL2Q9UJF2 1139 aa22.15■■□□□ 1.14
CLK3-202ENST00000395066 DBR1Q9UK59 544 aaKnown RBP22.15■■□□□ 1.14
CLK3-202ENST00000395066 FOXO6A8MYZ6 492 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 H0YIN7 160 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 PPIP5K2O43314 1243 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 DNAJC8O75937 253 aaPredicted RBP22.14■■□□□ 1.14
CLK3-202ENST00000395066 RARAP10276 462 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 DLATP10515 647 aaKnown RBP22.14■■□□□ 1.14
CLK3-202ENST00000395066 CTNNA2P26232 953 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 CHRNA3P32297 505 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 FMO1Q01740 532 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 SNX1Q13596 522 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 SEL1L2Q5TEA6 688 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 ZNF653Q96CK0 615 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 EHMT1Q9H9B1 1298 aa22.14■■□□□ 1.14
CLK3-202ENST00000395066 DNAJC17Q9NVM6 304 aaKnown RBP22.14■■□□□ 1.14
CLK3-202ENST00000395066 NUDT17P0C025 328 aa22.14■■□□□ 1.13
CLK3-202ENST00000395066 IFNAR2P48551 515 aa22.14■■□□□ 1.13
CLK3-202ENST00000395066 C2CD6Q53TS8 623 aa22.14■■□□□ 1.13
CLK3-202ENST00000395066 DAB2IPQ5VWQ8 1189 aa22.14■■□□□ 1.13
CLK3-202ENST00000395066 TRIM7Q9C029 511 aa22.14■■□□□ 1.13
CLK3-202ENST00000395066 MIF4GDA9UHW6 222 aaKnown RBP22.13■■□□□ 1.13
CLK3-202ENST00000395066 RGS16O15492 202 aaPredicted RBP22.13■■□□□ 1.13
CLK3-202ENST00000395066 P4HBP07237 508 aaKnown RBP22.13■■□□□ 1.13
CLK3-202ENST00000395066 PLS3P13797 630 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 ELF1P32519 619 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 RASA3Q14644 834 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 CCDC197Q8NCU1 140 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 C1orf54Q8WWF1 131 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 RIT2Q99578 217 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 TMEM206Q9H813 350 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 SPDYE2BA6NHP3 402 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 CLDN3O15551 220 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 SPDYE6P0CI01 402 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 ADSSP30520 456 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 LLGL2Q6P1M3 1020 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 FAM71AQ8IYT1 594 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 CD101Q93033 1021 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 DDX23Q9BUQ8 820 aaKnown RBP22.13■■□□□ 1.13
CLK3-202ENST00000395066 TMOD2Q9NZR1 351 aa22.13■■□□□ 1.13
CLK3-202ENST00000395066 EIF2AK2P19525 551 aaKnown RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 IBSPP21815 317 aaPredicted RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 YWHABP31946 246 aaKnown RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 HADHBP55084 474 aaKnown RBP22.12■■□□□ 1.13
CLK3-202ENST00000395066 MRPS9P82933 396 aaKnown RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms