RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PADI3Q9ULW8 664 aa11.14□□□□□ -0.63
VPS53-202ENST00000389040 A0A087WZ62 844 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 FRMD3A2A2Y4 597 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 SOWAHDA6NJG2 315 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 RRP9O43818 475 aaKnown RBP11.13□□□□□ -0.63
VPS53-202ENST00000389040 FAM13AO94988 1023 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 SKIP12755 728 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 IDEP14735 1019 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 FECHP22830 423 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 EHHADHQ08426 723 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 TMEM62Q0P6H9 643 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 MAPK7Q13164 816 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 SYCP1Q15431 976 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 CENPPQ6IPU0 288 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 TRIM65Q6PJ69 517 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 CCDC65Q8IXS2 484 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 DAW1Q8N136 415 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 GUF1Q8N442 669 aaKnown RBP11.13□□□□□ -0.63
VPS53-202ENST00000389040 DEPTORQ8TB45 409 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ZNF507Q8TCN5 953 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 CNOT6LQ96LI5 555 aaKnown RBP11.13□□□□□ -0.63
VPS53-202ENST00000389040 REEP2Q9BRK0 252 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 FDXACB1Q9BRP7 624 aaPredicted RBP11.13□□□□□ -0.63
VPS53-202ENST00000389040 TUBGCP2Q9BSJ2 902 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 UBE2OQ9C0C9 1292 aaKnown RBP11.13□□□□□ -0.63
VPS53-202ENST00000389040 SEMA6BQ9H3T3 888 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 OLFML3Q9NRN5 406 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 C1orf112Q9NSG2 853 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ABHD10Q9NUJ1 306 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 GINS2Q9Y248 185 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 CCDC175P0C221 793 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 GHRP10912 638 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 NPTX2P47972 431 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ALCAMQ13740 583 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 CAPSQ13938 189 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 MTF1Q14872 753 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 MAPK6Q16659 721 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 TMEM240Q5SV17 173 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 RAD9BQ6WBX8 426 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 MTERF4Q7Z6M4 381 aaKnown RBP11.13□□□□□ -0.63
VPS53-202ENST00000389040 DBF4BQ8NFT6 615 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ASAP3Q8TDY4 903 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 DNAJC19Q96DA6 116 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 DESI2Q9BSY9 194 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 PRO3102Q9H379 93 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 FZD8Q9H461 694 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 CDHR5Q9HBB8 845 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ERVK-5Q9HDB9 667 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 GPRC5CQ9NQ84 441 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ARHGAP28Q9P2N2 729 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 DNAI1Q9UI46 699 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 ST3GAL5Q9UNP4 418 aa11.13□□□□□ -0.63
VPS53-202ENST00000389040 KAT6AQ92794 2004 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 LRRIQ4A6NIV6 560 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 K7ERI5 159 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 PES1O00541 588 aaKnown RBP11.12□□□□□ -0.63
VPS53-202ENST00000389040 ZSCAN20P17040 1043 aaPredicted RBP11.12□□□□□ -0.63
VPS53-202ENST00000389040 RASIP1Q5U651 963 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 STXBP4Q6ZWJ1 553 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 C16orf59Q7L2K0 433 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 MAEAQ7L5Y9 396 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 APBB1IPQ7Z5R6 666 aaPredicted RBP11.12□□□□□ -0.63
VPS53-202ENST00000389040 DEFB128Q7Z7B8 93 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 TMTC1Q8IUR5 882 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 KSR1Q8IVT5 923 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 MYCT1Q8N699 235 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 HVCN1Q96D96 273 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 VWCEQ96DN2 955 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 TSPYL2Q9H2G4 693 aaPredicted RBP11.12□□□□□ -0.63
VPS53-202ENST00000389040 AGO3Q9H9G7 860 aaKnown RBP11.12□□□□□ -0.63
VPS53-202ENST00000389040 L2HGDHQ9H9P8 463 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 KMT5AQ9NQR1 393 aa11.12□□□□□ -0.63
VPS53-202ENST00000389040 NOC2LQ9Y3T9 749 aaKnown RBP11.12□□□□□ -0.63
VPS53-202ENST00000389040 CCDC169A6NNP5 214 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 RNF225M0QZC1 329 aaPredicted RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 ACKR2O00590 384 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 ERLIN2O94905 339 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 CD52P31358 61 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 MTIF2P46199 727 aaKnown RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 NCKAP1LP55160 1127 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 PEX3P56589 373 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 LRRC63Q05C16 580 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 COASYQ13057 564 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 HSP90AA2PQ14568 343 aaPredicted RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 FOXR2Q6PJQ5 311 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 ZNF365Q70YC5 407 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 CATSPER4Q7RTX7 472 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 FAM228AQ86W67 206 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 FAM178BQ8IXR5 827 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 TDHQ8IZJ6 230 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 TMEM40Q8WWA1 233 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 ANKRD7Q92527 254 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 EEF2KMTQ96G04 330 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 ELAC1Q9H777 363 aaKnown RBP11.11□□□□□ -0.63
VPS53-202ENST00000389040 AGPAT5Q9NUQ2 364 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 PCDHB13Q9Y5F0 798 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 ADGRG1Q9Y653 693 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 LOXHD1Q8IVV2 1947 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 INO80B-WBP1J3KQ70 363 aa11.11□□□□□ -0.63
VPS53-202ENST00000389040 SLU7O95391 586 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms