RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 A0A0X1KG70 313 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ARHGEF37A1IGU5 675 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 SPDYE5A6NIY4 337 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ZSCAN20P17040 1043 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 CACNA2D1P54289 1103 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TRMT5Q32P41 509 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 ZNF658Q5TYW1 1059 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 C12orf60Q5U649 245 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 PLEKHM2Q8IWE5 1019 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 GPT2Q8TD30 523 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 FAM162AQ96A26 154 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 C19orf44Q9H6X5 657 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 PLGRKTQ9HBL7 147 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 NPHS2Q9NP85 383 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 NOS1APO75052 506 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 RAP1GAPP47736 663 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 SARSP49591 514 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 SNX17Q15036 470 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ZNF284Q2VY69 593 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TSHZ3Q63HK5 1081 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 GALNT6Q8NCL4 622 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 PIGOQ8TEQ8 1089 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 KLHL32Q96NJ5 620 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 OSBPL11Q9BXB4 747 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 CDYLQ9Y232 598 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 FAM135AQ9P2D6 1515 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 IL12AP29459 219 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 MXI1P50539 228 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 PARP10Q53GL7 1025 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 SPAG16Q8N0X2 631 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TMA16Q96EY4 203 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 MND1Q9BWT6 205 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 C6orf62Q9GZU0 229 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 MCUBQ9NWR8 336 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 FAM47DPA6NHR8 397 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 RTN3O95197 1032 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 FGGP02679 453 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 HNMTP50135 292 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ABATP80404 500 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TYSND1Q2T9J0 566 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 BICRALQ6AI39 1079 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ERICH1Q86X53 443 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ANKRD49Q8WVL7 239 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 SCFD1Q8WVM8 642 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 FOXP3Q9BZS1 431 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 COL4A3BPQ9Y5P4 624 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 GSPT1P15170 499 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 TXKP42681 527 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 COPAP53621 1224 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 PPM1KQ8N3J5 372 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 HSPH1Q92598 858 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 EIF2AK4Q9P2K8 1649 aaKnown RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 TTC21BQ7Z4L5 1316 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ASXL1Q8IXJ9 1541 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 UBE2QL1A1L167 161 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 TOM1O60784 492 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 HUS1O60921 280 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 FLT3P36888 993 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 MCCD1P59942 119 aaPredicted RBP9.2□□□□□ -0.94
LIG3-202ENST00000378526 SSTP61278 116 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ANKRD26P1Q6NSI1 321 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 ZFP1Q6P2D0 407 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 CDHR1Q96JP9 859 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 RBBP8Q99708 897 aa9.2□□□□□ -0.94
LIG3-202ENST00000378526 STX11O75558 287 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 CCDC130P13994 396 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ZC2HC1CQ53FD0 456 aaPredicted RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 AKIRIN2Q53H80 203 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 TRPC4APQ8TEL6 797 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 C12orf4Q9NQ89 552 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 TBC1D7Q9P0N9 293 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 SPEF1Q9Y4P9 236 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ARHGAP31Q2M1Z3 1444 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 SOWAHDA6NJG2 315 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 MYO1GB0I1T2 1018 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 SNAP23O00161 211 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 TSPAN4O14817 238 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 SLC27A2O14975 620 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 MFAP3LO75121 409 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 CDH16O75309 829 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 SRP72O76094 671 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 PABPC1P11940 636 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 OASLQ15646 514 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 LRRC17Q8N6Y2 441 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 CCDC185Q8N715 623 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 PSMA8Q8TAA3 256 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 KATNAL1Q9BW62 490 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 VTA1Q9NP79 307 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 DNAJC11Q9NVH1 559 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 NACADO15069 1562 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 APOC1P02654 83 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ALOX12P18054 663 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ARF4P18085 180 aaPredicted RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 RPS6P62753 249 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 ADAM9Q13443 819 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 MPP2Q14168 576 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 PRPF39Q86UA1 669 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 REXO1Q8N1G1 1221 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 FNIP1Q8TF40 1166 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 TRIM54Q9BYV2 358 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms