RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 SNRNP48Q6IEG0 339 aaKnown RBP11.67□□□□□ -0.54
RTN3-201ENST00000338850 RINT1Q6NUQ1 792 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 C1orf186Q6ZWK4 172 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 B4GALNT4Q76KP1 1039 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 YTHDF3Q7Z739 585 aaKnown RBP11.67□□□□□ -0.54
RTN3-201ENST00000338850 GSPT2Q8IYD1 628 aaKnown RBP11.67□□□□□ -0.54
RTN3-201ENST00000338850 TDHQ8IZJ6 230 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 TSEN2Q8NCE0 465 aaKnown RBP11.67□□□□□ -0.54
RTN3-201ENST00000338850 SLC17A8Q8NDX2 589 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 OLIG1Q8TAK6 271 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 MORC4Q8TE76 937 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 RFFLQ8WZ73 363 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 DRC1Q96MC2 740 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 ZIM3Q96PE6 472 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 NAP1L3Q99457 506 aaPredicted RBP11.67□□□□□ -0.54
RTN3-201ENST00000338850 EIF2AK1Q9BQI3 630 aaKnown RBP11.67□□□□□ -0.54
RTN3-201ENST00000338850 TINF2Q9BSI4 451 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 TIPINQ9BVW5 301 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 STRA6Q9BX79 667 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 CARD9Q9H257 536 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 PARVGQ9HBI0 331 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 FAM114A2Q9NRY5 505 aa11.67□□□□□ -0.54
RTN3-201ENST00000338850 EBAG9O00559 213 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 TGFB1I1O43294 461 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 ZBED4O75132 1171 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 ZMYND10O75800 440 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 FAM13AO94988 1023 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 TAL1P17542 331 aaPredicted RBP11.66□□□□□ -0.54
RTN3-201ENST00000338850 SOX5P35711 763 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 ADCYAP1R1P41586 468 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 NAP1L1P55209 391 aaKnown RBP11.66□□□□□ -0.54
RTN3-201ENST00000338850 SNX17Q15036 470 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 TTMPQ5BVD1 217 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 SLC39A5Q6ZMH5 540 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 RUFY4Q6ZNE9 571 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.66□□□□□ -0.54
RTN3-201ENST00000338850 HS2ST1Q7LGA3 356 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 MAATS1Q7Z4T9 603 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 CROCCP2Q86T23 111 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 FAM160B2Q86V87 743 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 CCDC26Q8TAB7 109 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 CASKIN2Q8WXE0 1202 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 ATP6V1G3Q96LB4 118 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 NACC1Q96RE7 527 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 FIZ1Q96SL8 496 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 RIT2Q99578 217 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 RANBP17Q9H2T7 1088 aaKnown RBP11.66□□□□□ -0.54
RTN3-201ENST00000338850 ST6GALNAC4Q9H4F1 302 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 SLC38A10Q9HBR0 1119 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 EPB41L5Q9HCM4 733 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 GCNT4Q9P109 453 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 FEM1BQ9UK73 627 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 RIPK3Q9Y572 518 aa11.66□□□□□ -0.54
RTN3-201ENST00000338850 WDR81Q562E7 1941 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 DNAJC25-GNG10A0A024R161 153 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 NPHP3-ACAD11A0A0J9YXS1 232 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 FAM187AA6NFU0 413 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 MIF4GDA9UHW6 222 aaKnown RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 F8VZ95 297 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 DDX3XO00571 662 aaKnown RBP eCLIP11.65□□□□□ -0.546e-22■■■□□ 17.7
RTN3-201ENST00000338850 RAD51CO43502 376 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 MTA2O94776 668 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 LYPLA2O95372 231 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 GGPS1O95749 300 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 FTCDO95954 541 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 MYCNP04198 464 aaPredicted RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 PAEPP09466 180 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 ZNF865P0CJ78 1059 aaPredicted RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 RARBP10826 455 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 SLC9A1P19634 815 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 ECHS1P30084 290 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 FMO5P49326 533 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 CARSP49589 748 aaKnown RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 DRG2P55039 364 aaKnown RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 GUCY2DQ02846 1103 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 C11orf63Q6NUN7 778 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 GPR153Q6NV75 609 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 NT5DC3Q86UY8 548 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 RHOT2Q8IXI1 618 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 FAM186BQ8IYM0 893 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 CPXCR1Q8N123 301 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 RIN2Q8WYP3 895 aaPredicted RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 PIK3R5Q8WYR1 880 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 RUNDC3BQ96NL0 473 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 KRT12Q99456 494 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.65□□□□□ -0.54
RTN3-201ENST00000338850 RUSC1Q9BVN2 902 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 BHMT2Q9H2M3 363 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 TMBIM4Q9HC24 238 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 RAVER2Q9HCJ3 691 aaKnown RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 XPNPEP3Q9NQH7 507 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 MAP3K20Q9NYL2 800 aaKnown RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 TBC1D7Q9P0N9 293 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 PNMA2Q9UL42 364 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 NFU1Q9UMS0 254 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 ATP11BQ9Y2G3 1177 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 NOC2LQ9Y3T9 749 aaKnown RBP11.65□□□□□ -0.54
RTN3-201ENST00000338850 PCDHB13Q9Y5F0 798 aa11.65□□□□□ -0.54
RTN3-201ENST00000338850 LAMA3Q16787 3333 aa11.64□□□□□ -0.55
RTN3-201ENST00000338850 ZNF233A6NK53 670 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms